RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 MRPL42Q9Y6G3 142 aaKnown RBP3.24□□□□□ -1.89
LIMA1-209ENST00000552008 CDC45O75419 566 aa3.23□□□□□ -1.89
LIMA1-209ENST00000552008 PTH1RQ03431 593 aa3.23□□□□□ -1.89
LIMA1-209ENST00000552008 HSP90AA2PQ14568 343 aaPredicted RBP3.23□□□□□ -1.89
LIMA1-209ENST00000552008 SLC10A6Q3KNW5 377 aa3.23□□□□□ -1.89
LIMA1-209ENST00000552008 HS1BP3Q53T59 392 aa3.23□□□□□ -1.89
LIMA1-209ENST00000552008 SLFN13Q68D06 897 aa3.23□□□□□ -1.89
LIMA1-209ENST00000552008 MRM1Q6IN84 353 aaKnown RBP3.23□□□□□ -1.89
LIMA1-209ENST00000552008 SDE2Q6IQ49 451 aa3.23□□□□□ -1.89
LIMA1-209ENST00000552008 GLCCI1Q86VQ1 547 aa3.23□□□□□ -1.89
LIMA1-209ENST00000552008 HOMER1Q86YM7 354 aa3.23□□□□□ -1.89
LIMA1-209ENST00000552008 TTLL6Q8N841 843 aa3.23□□□□□ -1.89
LIMA1-209ENST00000552008 BVESQ8NE79 360 aa3.23□□□□□ -1.89
LIMA1-209ENST00000552008 SH3TC2Q8TF17 1288 aa3.23□□□□□ -1.89
LIMA1-209ENST00000552008 THAP3Q8WTV1 239 aaPredicted RBP3.23□□□□□ -1.89
LIMA1-209ENST00000552008 PEX11GQ96HA9 241 aa3.23□□□□□ -1.89
LIMA1-209ENST00000552008 PTPN18Q99952 460 aa3.23□□□□□ -1.89
LIMA1-209ENST00000552008 SYT3Q9BQG1 590 aa3.23□□□□□ -1.89
LIMA1-209ENST00000552008 SPATA9Q9BWV2 254 aa3.23□□□□□ -1.89
LIMA1-209ENST00000552008 NOL6Q9H6R4 1146 aaKnown RBP3.23□□□□□ -1.89
LIMA1-209ENST00000552008 GP6Q9HCN6 339 aa3.23□□□□□ -1.89
LIMA1-209ENST00000552008 NUDT5Q9UKK9 219 aa3.23□□□□□ -1.89
LIMA1-209ENST00000552008 DIS3Q9Y2L1 958 aaKnown RBP3.23□□□□□ -1.89
LIMA1-209ENST00000552008 TRAV20A0A0B4J274 112 aa3.22□□□□□ -1.89
LIMA1-209ENST00000552008 KCNH1O95259 989 aa3.22□□□□□ -1.89
LIMA1-209ENST00000552008 GSNP06396 782 aa3.22□□□□□ -1.89
LIMA1-209ENST00000552008 NCLP19338 710 aaKnown RBP3.22□□□□□ -1.89
LIMA1-209ENST00000552008 NOP2P46087 812 aaKnown RBP3.22□□□□□ -1.89
LIMA1-209ENST00000552008 KCNJ6P48051 423 aa3.22□□□□□ -1.89
LIMA1-209ENST00000552008 KRTAP10-11P60412 298 aa3.22□□□□□ -1.89
LIMA1-209ENST00000552008 AMPD2Q01433 879 aa3.22□□□□□ -1.89
LIMA1-209ENST00000552008 POU4F1Q01851 419 aa3.22□□□□□ -1.89
LIMA1-209ENST00000552008 LSM12Q3MHD2 195 aaKnown RBP3.22□□□□□ -1.89
LIMA1-209ENST00000552008 PRR31Q5SQ13 230 aa3.22□□□□□ -1.89
LIMA1-209ENST00000552008 KRTAP5-11Q6L8G4 156 aa3.22□□□□□ -1.89
LIMA1-209ENST00000552008 JAZF1Q86VZ6 243 aa3.22□□□□□ -1.89
LIMA1-209ENST00000552008 LDLRAD3Q86YD5 345 aa3.22□□□□□ -1.89
LIMA1-209ENST00000552008 FAM177A1Q8N128 213 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-209ENST00000552008 FIBCD1Q8N539 461 aa3.22□□□□□ -1.89
LIMA1-209ENST00000552008 ZSWIM2Q8NEG5 633 aa3.22□□□□□ -1.89
LIMA1-209ENST00000552008 NLGN2Q8NFZ4 835 aa3.22□□□□□ -1.89
LIMA1-209ENST00000552008 ZNF669Q96BR6 464 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-209ENST00000552008 SGSM3Q96HU1 749 aa3.22□□□□□ -1.89
LIMA1-209ENST00000552008 ZDHHC15Q96MV8 337 aa3.22□□□□□ -1.89
LIMA1-209ENST00000552008 AARSD1Q9BTE6 412 aaKnown RBP3.22□□□□□ -1.89
LIMA1-209ENST00000552008 SLC12A9Q9BXP2 914 aa3.22□□□□□ -1.89
LIMA1-209ENST00000552008 KLHL25Q9H0H3 589 aa3.22□□□□□ -1.89
LIMA1-209ENST00000552008 FANCLQ9NW38 375 aa3.22□□□□□ -1.89
LIMA1-209ENST00000552008 A0A087WZG4 1122 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 FGF10O15520 208 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-209ENST00000552008 CBFA2T2O43439 604 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 DIAPH1O60610 1272 aaKnown RBP3.21□□□□□ -1.9
LIMA1-209ENST00000552008 ZBTB7AO95365 584 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 CYP1A1P04798 512 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-209ENST00000552008 ITGAVP06756 1048 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 HSD3B2P26439 372 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 L1CAMP32004 1257 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 ZNF445P59923 1031 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 PPP2R2AP63151 447 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 DPY19L1Q2PZI1 675 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 USP39Q53GS9 565 aaKnown RBP3.21□□□□□ -1.9
LIMA1-209ENST00000552008 C2orf27AQ580R0 203 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 ZC3H12BQ5HYM0 836 aaKnown RBP3.21□□□□□ -1.9
LIMA1-209ENST00000552008 PRAMEF18Q5VWM3 479 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 STK32CQ86UX6 486 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 LILRB2Q8N423 598 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 MBD6Q96DN6 1003 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 RCC1LQ96I51 464 aaKnown RBP3.21□□□□□ -1.9
LIMA1-209ENST00000552008 RNPC3Q96LT9 517 aaKnown RBP3.21□□□□□ -1.9
LIMA1-209ENST00000552008 AGAP2Q99490 1192 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 PRR13Q9NZ81 148 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 APEX2Q9UBZ4 518 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 TBX22Q9Y458 520 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 FHOD1Q9Y613 1164 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 PTCH2Q9Y6C5 1203 aa3.21□□□□□ -1.9
LIMA1-209ENST00000552008 TRBV23-1A0A0A0MS06 115 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 CCDC163A0A0D9SF12 145 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 A0A1W2PQU0 124 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 ESYT3A0FGR9 886 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 ANKRD62A6NC57 917 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 PPP1R12AO14974 1030 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-209ENST00000552008 PRODHO43272 600 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 VAMP4O75379 141 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 ASMTLO95671 621 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 CD3EP07766 207 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 SNRPB2P08579 225 aaKnown RBP3.2□□□□□ -1.9
LIMA1-209ENST00000552008 FAM153BP0C7A2 387 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 KRTAP10-7P60409 375 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-209ENST00000552008 DGCR2P98153 550 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 TCEA2Q15560 299 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 CCDC142Q17RM4 750 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 LONRF2Q1L5Z9 754 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 RNF187Q5TA31 235 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-209ENST00000552008 PKN3Q6P5Z2 889 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 NSMFQ6X4W1 530 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 ZNF227Q86WZ6 799 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 KBTBD2Q8IY47 623 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 ARHGEF39Q8N4T4 335 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 ZBTB38Q8NAP3 1195 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-209ENST00000552008 NETO2Q8NC67 525 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms