RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 TMEM199Q8N511 208 aa16.25■□□□□ 0.19
USP28-209ENST00000540925 PGBD1Q96JS3 809 aa16.25■□□□□ 0.19
USP28-209ENST00000540925 LARP6Q9BRS8 491 aaKnown RBP16.25■□□□□ 0.19
USP28-209ENST00000540925 KATNAL1Q9BW62 490 aa16.25■□□□□ 0.19
USP28-209ENST00000540925 SLC26A6Q9BXS9 759 aa16.25■□□□□ 0.19
USP28-209ENST00000540925 MLXIPQ9HAP2 919 aa16.25■□□□□ 0.19
USP28-209ENST00000540925 TMEM260Q9NX78 707 aa16.25■□□□□ 0.19
USP28-209ENST00000540925 CHD9Q3L8U1 2897 aa16.25■□□□□ 0.19
USP28-209ENST00000540925 PITPNM1O00562 1244 aa16.24■□□□□ 0.19
USP28-209ENST00000540925 PPFIA3O75145 1194 aa16.24■□□□□ 0.19
USP28-209ENST00000540925 LGALS2P05162 132 aa16.24■□□□□ 0.19
USP28-209ENST00000540925 RBL2Q08999 1139 aa16.24■□□□□ 0.19
USP28-209ENST00000540925 HIC1Q14526 733 aa16.24■□□□□ 0.19
USP28-209ENST00000540925 KIAA0753Q2KHM9 967 aa16.24■□□□□ 0.19
USP28-209ENST00000540925 FAM47CQ5HY64 1035 aa16.24■□□□□ 0.19
USP28-209ENST00000540925 TMEM240Q5SV17 173 aa16.24■□□□□ 0.19
USP28-209ENST00000540925 GIMAP8Q8ND71 665 aaPredicted RBP16.24■□□□□ 0.19
USP28-209ENST00000540925 CYP2W1Q8TAV3 490 aa16.24■□□□□ 0.19
USP28-209ENST00000540925 CCDC12Q8WUD4 166 aaPredicted RBP16.24■□□□□ 0.19
USP28-209ENST00000540925 DHX38Q92620 1227 aaKnown RBP16.24■□□□□ 0.19
USP28-209ENST00000540925 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.24■□□□□ 0.19
USP28-209ENST00000540925 MXRA8Q9BRK3 442 aa16.24■□□□□ 0.19
USP28-209ENST00000540925 EHMT1Q9H9B1 1298 aa16.24■□□□□ 0.19
USP28-209ENST00000540925 SH3GLB2Q9NR46 395 aa16.24■□□□□ 0.19
USP28-209ENST00000540925 HDAC6Q9UBN7 1215 aa16.24■□□□□ 0.19
USP28-209ENST00000540925 TPCN1Q9ULQ1 816 aa16.24■□□□□ 0.19
USP28-209ENST00000540925 TANC1Q9C0D5 1861 aa16.23■□□□□ 0.19
USP28-209ENST00000540925 MEIS1O00470 390 aa16.23■□□□□ 0.19
USP28-209ENST00000540925 PFKFB2O60825 505 aa16.23■□□□□ 0.19
USP28-209ENST00000540925 CYP3A4P08684 503 aa16.23■□□□□ 0.19
USP28-209ENST00000540925 SCRN1Q12765 414 aa16.23■□□□□ 0.19
USP28-209ENST00000540925 MTMR1Q13613 665 aa16.23■□□□□ 0.19
USP28-209ENST00000540925 NPY5RQ15761 445 aa16.23■□□□□ 0.19
USP28-209ENST00000540925 CEP55Q53EZ4 464 aa16.23■□□□□ 0.19
USP28-209ENST00000540925 IL23AQ9NPF7 189 aa16.23■□□□□ 0.19
USP28-209ENST00000540925 KCNH7Q9NS40 1196 aa16.23■□□□□ 0.19
USP28-209ENST00000540925 IGLV3-22A0A075B6J6 115 aa16.22■□□□□ 0.19
USP28-209ENST00000540925 H3BRB1 525 aa16.22■□□□□ 0.19
USP28-209ENST00000540925 EDIL3O43854 480 aa16.22■□□□□ 0.19
USP28-209ENST00000540925 AK2P54819 239 aa16.22■□□□□ 0.19
USP28-209ENST00000540925 CCL23P55773 120 aa16.22■□□□□ 0.19
USP28-209ENST00000540925 ARHGAP4P98171 946 aa16.22■□□□□ 0.19
USP28-209ENST00000540925 PTGISQ16647 500 aa16.22■□□□□ 0.19
USP28-209ENST00000540925 JAKMIP3Q5VZ66 844 aa16.22■□□□□ 0.19
USP28-209ENST00000540925 MCTP2Q6DN12 878 aa16.22■□□□□ 0.19
USP28-209ENST00000540925 NIPA1Q7RTP0 329 aa16.22■□□□□ 0.19
USP28-209ENST00000540925 FAM177A1Q8N128 213 aaPredicted RBP16.22■□□□□ 0.19
USP28-209ENST00000540925 REXO1Q8N1G1 1221 aaKnown RBP16.22■□□□□ 0.19
USP28-209ENST00000540925 TUT1Q9H6E5 874 aaKnown RBP16.22■□□□□ 0.19
USP28-209ENST00000540925 C6orf50Q9HD87 102 aa16.22■□□□□ 0.19
USP28-209ENST00000540925 VPS54Q9P1Q0 977 aa16.22■□□□□ 0.19
USP28-209ENST00000540925 NFASCO94856 1347 aa16.21■□□□□ 0.19
USP28-209ENST00000540925 GSTTP1A0A1W2PQM5 241 aa16.21■□□□□ 0.19
USP28-209ENST00000540925 FAM86B1E9PN63 330 aa16.21■□□□□ 0.19
USP28-209ENST00000540925 M0R2N6 131 aa16.21■□□□□ 0.19
USP28-209ENST00000540925 NOP56O00567 594 aaKnown RBP16.21■□□□□ 0.19
USP28-209ENST00000540925 DEXIO95424 95 aa16.21■□□□□ 0.19
USP28-209ENST00000540925 FAM86B2P0C5J1 330 aa16.21■□□□□ 0.19
USP28-209ENST00000540925 ARP10275 920 aa16.21■□□□□ 0.19
USP28-209ENST00000540925 ACRP10323 421 aa16.21■□□□□ 0.19
USP28-209ENST00000540925 GNA11P29992 359 aa16.21■□□□□ 0.19
USP28-209ENST00000540925 AKAP17AQ02040 695 aaKnown RBP16.21■□□□□ 0.19
USP28-209ENST00000540925 SSRP1Q08945 709 aaKnown RBP16.21■□□□□ 0.19
USP28-209ENST00000540925 STK3Q13188 491 aa16.21■□□□□ 0.19
USP28-209ENST00000540925 ITGB3BPQ13352 177 aaPredicted RBP16.21■□□□□ 0.19
USP28-209ENST00000540925 TRIM71Q2Q1W2 868 aaKnown RBP16.21■□□□□ 0.19
USP28-209ENST00000540925 PSRC1Q6PGN9 363 aaPredicted RBP16.21■□□□□ 0.19
USP28-209ENST00000540925 ZNF365Q70YC5 407 aa16.21■□□□□ 0.19
USP28-209ENST00000540925 C7orf31Q8N865 590 aa16.21■□□□□ 0.19
USP28-209ENST00000540925 CCDC148Q8NFR7 591 aa16.21■□□□□ 0.19
USP28-209ENST00000540925 SCLYQ96I15 445 aa16.21■□□□□ 0.19
USP28-209ENST00000540925 ALG1Q9BT22 464 aa16.21■□□□□ 0.19
USP28-209ENST00000540925 AGO4Q9HCK5 861 aaKnown RBP16.21■□□□□ 0.19
USP28-209ENST00000540925 STK36Q9NRP7 1315 aa16.2■□□□□ 0.18
USP28-209ENST00000540925 CHD7Q9P2D1 2997 aa16.2■□□□□ 0.18
USP28-209ENST00000540925 CTDNEP1O95476 244 aa16.2■□□□□ 0.18
USP28-209ENST00000540925 ADAM17P78536 824 aa16.2■□□□□ 0.18
USP28-209ENST00000540925 SMAD3P84022 425 aaKnown RBP16.2■□□□□ 0.18
USP28-209ENST00000540925 GPNMBQ14956 572 aa16.2■□□□□ 0.18
USP28-209ENST00000540925 ANKRD1Q15327 319 aa16.2■□□□□ 0.18
USP28-209ENST00000540925 FAM109BQ6ICB4 259 aaPredicted RBP16.2■□□□□ 0.18
USP28-209ENST00000540925 TRAF7Q6Q0C0 670 aa16.2■□□□□ 0.18
USP28-209ENST00000540925 TRIM50Q86XT4 487 aa16.2■□□□□ 0.18
USP28-209ENST00000540925 TRIM22Q8IYM9 498 aa16.2■□□□□ 0.18
USP28-209ENST00000540925 CAGE1Q8TC20 777 aa16.2■□□□□ 0.18
USP28-209ENST00000540925 HERVK_113Q902F9 699 aa16.2■□□□□ 0.18
USP28-209ENST00000540925 WNT8BQ93098 351 aa16.2■□□□□ 0.18
USP28-209ENST00000540925 RNPC3Q96LT9 517 aaKnown RBP16.2■□□□□ 0.18
USP28-209ENST00000540925 AIFM3Q96NN9 605 aa16.2■□□□□ 0.18
USP28-209ENST00000540925 SCN5AQ14524 2016 aa16.19■□□□□ 0.18
USP28-209ENST00000540925 EYSQ5T1H1 3165 aa16.19■□□□□ 0.18
USP28-209ENST00000540925 CPLX1O14810 134 aa16.19■□□□□ 0.18
USP28-209ENST00000540925 DHX15O43143 795 aaKnown RBP16.19■□□□□ 0.18
USP28-209ENST00000540925 LARGE1O95461 756 aa16.19■□□□□ 0.18
USP28-209ENST00000540925 IQCF3P0C7M6 154 aa16.19■□□□□ 0.18
USP28-209ENST00000540925 SMIM10L2AP0DMW4 78 aa16.19■□□□□ 0.18
USP28-209ENST00000540925 SMIM10L2BP0DMW5 78 aa16.19■□□□□ 0.18
USP28-209ENST00000540925 CIITAP33076 1130 aa16.19■□□□□ 0.18
USP28-209ENST00000540925 TCF7P36402 384 aaPredicted RBP16.19■□□□□ 0.18
USP28-209ENST00000540925 CHMP4BP1P59074 171 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms