RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 CTAGE1Q96RT6 745 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 WDR24Q96S15 920 aa11.98□□□□□ -0.49
CLIP1-210ENST00000538120 DUSP9Q99956 384 aaKnown RBP11.98□□□□□ -0.49
CLIP1-210ENST00000538120 RANBP17Q9H2T7 1088 aaKnown RBP11.98□□□□□ -0.49
CLIP1-210ENST00000538120 KCNJ18B7U540 433 aa11.97□□□□□ -0.49
CLIP1-210ENST00000538120 FAM86B1E9PN63 330 aa11.97□□□□□ -0.49
CLIP1-210ENST00000538120 PIK3CDO00329 1044 aa11.97□□□□□ -0.49
CLIP1-210ENST00000538120 PLA2G6O60733 806 aa11.97□□□□□ -0.49
CLIP1-210ENST00000538120 SASH3O75995 380 aa11.97□□□□□ -0.49
CLIP1-210ENST00000538120 FOSP01100 380 aaPredicted RBP11.97□□□□□ -0.49
CLIP1-210ENST00000538120 FAM86B2P0C5J1 330 aa11.97□□□□□ -0.49
CLIP1-210ENST00000538120 COPB1P53618 953 aaKnown RBP11.97□□□□□ -0.49
CLIP1-210ENST00000538120 KCNJ12Q14500 433 aa11.97□□□□□ -0.49
CLIP1-210ENST00000538120 ZYXQ15942 572 aaKnown RBP11.97□□□□□ -0.49
CLIP1-210ENST00000538120 COBLL1Q53SF7 1204 aa11.97□□□□□ -0.49
CLIP1-210ENST00000538120 CNNM4Q6P4Q7 775 aa11.97□□□□□ -0.49
CLIP1-210ENST00000538120 KIAA0895Q8NCT3 520 aa11.97□□□□□ -0.49
CLIP1-210ENST00000538120 DHTKD1Q96HY7 919 aaPredicted RBP11.97□□□□□ -0.49
CLIP1-210ENST00000538120 GPBP1L1Q9HC44 474 aaPredicted RBP11.97□□□□□ -0.49
CLIP1-210ENST00000538120 ZCCHC17Q9NP64 241 aaKnown RBP11.97□□□□□ -0.49
CLIP1-210ENST00000538120 EXOC1Q9NV70 894 aa11.97□□□□□ -0.49
CLIP1-210ENST00000538120 ASTN2O75129 1339 aaPredicted RBP11.97□□□□□ -0.49
CLIP1-210ENST00000538120 CIITAP33076 1130 aa11.97□□□□□ -0.49
CLIP1-210ENST00000538120 CCT6AP40227 531 aaKnown RBP11.97□□□□□ -0.49
CLIP1-210ENST00000538120 RASSF7Q02833 373 aa11.97□□□□□ -0.49
CLIP1-210ENST00000538120 SPIRE1Q08AE8 756 aa11.97□□□□□ -0.49
CLIP1-210ENST00000538120 R3HDM1Q15032 1099 aaKnown RBP11.97□□□□□ -0.49
CLIP1-210ENST00000538120 TMCO3Q6UWJ1 677 aa11.97□□□□□ -0.49
CLIP1-210ENST00000538120 UNC13DQ70J99 1090 aa11.97□□□□□ -0.49
CLIP1-210ENST00000538120 CDK5RAP3Q96JB5 506 aa11.97□□□□□ -0.49
CLIP1-210ENST00000538120 TAB2Q9NYJ8 693 aa11.97□□□□□ -0.49
CLIP1-210ENST00000538120 BCS1LQ9Y276 419 aa11.97□□□□□ -0.49
CLIP1-210ENST00000538120 PVALEFA0A1B0GWK0 134 aa11.96□□□□□ -0.49
CLIP1-210ENST00000538120 MARCH6O60337 910 aa11.96□□□□□ -0.49
CLIP1-210ENST00000538120 RPS12P25398 132 aaKnown RBP11.96□□□□□ -0.49
CLIP1-210ENST00000538120 CYP2C19P33261 490 aa11.96□□□□□ -0.49
CLIP1-210ENST00000538120 STAT3P40763 770 aa11.96□□□□□ -0.49
CLIP1-210ENST00000538120 GMPSP49915 693 aaPredicted RBP11.96□□□□□ -0.49
CLIP1-210ENST00000538120 SPAG1Q07617 926 aa11.96□□□□□ -0.49
CLIP1-210ENST00000538120 EHHADHQ08426 723 aa11.96□□□□□ -0.49
CLIP1-210ENST00000538120 CCDC174Q6PII3 467 aa11.96□□□□□ -0.49
CLIP1-210ENST00000538120 KIFC2Q96AC6 838 aa11.96□□□□□ -0.49
CLIP1-210ENST00000538120 VPS16Q9H269 839 aa11.96□□□□□ -0.49
CLIP1-210ENST00000538120 FBXO28Q9NVF7 368 aa11.96□□□□□ -0.49
CLIP1-210ENST00000538120 PPP2R2CQ9Y2T4 447 aa11.96□□□□□ -0.49
CLIP1-210ENST00000538120 CD2APQ9Y5K6 639 aa11.96□□□□□ -0.49
CLIP1-210ENST00000538120 LTBP3Q9NS15 1303 aa11.96□□□□□ -0.49
CLIP1-210ENST00000538120 CCDC66A2RUB6 948 aa11.96□□□□□ -0.5
CLIP1-210ENST00000538120 SPDYE3A6NKU9 549 aa11.96□□□□□ -0.5
CLIP1-210ENST00000538120 PSMA7O14818 248 aa11.96□□□□□ -0.5
CLIP1-210ENST00000538120 CYP3A4P08684 503 aa11.96□□□□□ -0.5
CLIP1-210ENST00000538120 CCNE1P24864 410 aa11.96□□□□□ -0.5
CLIP1-210ENST00000538120 RBL2Q08999 1139 aa11.96□□□□□ -0.5
CLIP1-210ENST00000538120 STIM1Q13586 685 aa11.96□□□□□ -0.5
CLIP1-210ENST00000538120 FILIP1LQ4L180 1135 aa11.96□□□□□ -0.5
CLIP1-210ENST00000538120 PRR16Q569H4 304 aa11.96□□□□□ -0.5
CLIP1-210ENST00000538120 ANKRD40Q6AI12 368 aa11.96□□□□□ -0.5
CLIP1-210ENST00000538120 TOGARAM2Q6ZUX3 1019 aa11.96□□□□□ -0.5
CLIP1-210ENST00000538120 DYMQ7RTS9 669 aa11.96□□□□□ -0.5
CLIP1-210ENST00000538120 SAMD7Q7Z3H4 446 aa11.96□□□□□ -0.5
CLIP1-210ENST00000538120 CHURC1Q8WUH1 139 aa11.96□□□□□ -0.5
CLIP1-210ENST00000538120 P2RX5Q93086 422 aa11.96□□□□□ -0.5
CLIP1-210ENST00000538120 TRERF1Q96PN7 1200 aa11.96□□□□□ -0.5
CLIP1-210ENST00000538120 SRRTQ9BXP5 876 aaKnown RBP11.96□□□□□ -0.5
CLIP1-210ENST00000538120 THAP9Q9H5L6 903 aa11.96□□□□□ -0.5
CLIP1-210ENST00000538120 TMEM51Q9NW97 253 aa11.96□□□□□ -0.5
CLIP1-210ENST00000538120 ITIH6Q6UXX5 1313 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 FZD9O00144 591 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 TBX3O15119 743 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 ASNSP08243 561 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 PTGER2P43116 358 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 EXOC8Q8IYI6 725 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 SLFN12Q8IYM2 578 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 CYP2W1Q8TAV3 490 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 DDX12PQ92771 950 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 CCDC47Q96A33 483 aaKnown RBP11.95□□□□□ -0.5
CLIP1-210ENST00000538120 ZBTB9Q96C00 473 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 DNAJC19Q96DA6 116 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 BAG1Q99933 345 aaPredicted RBP11.95□□□□□ -0.5
CLIP1-210ENST00000538120 SEMA6BQ9H3T3 888 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 SLC39A2Q9NP94 309 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 E9PMD0 336 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 N4BP3O15049 544 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 MED24O75448 989 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 SLC34A2O95436 690 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 INPP5BP32019 993 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 GNG11P61952 73 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 FAM193AP78312 1265 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 FAM160B2Q86V87 743 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 UPF1Q92900 1129 aaKnown RBP eCLIP11.95□□□□□ -0.5
CLIP1-210ENST00000538120 TRIM47Q96LD4 638 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 DESI2Q9BSY9 194 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 SH2D4AQ9H788 454 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.95□□□□□ -0.5
CLIP1-210ENST00000538120 FEM1BQ9UK73 627 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 KIAA1024Q9UPX6 916 aa11.95□□□□□ -0.5
CLIP1-210ENST00000538120 POTEB3A0JP26 581 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 EFCAB8A8MWE9 144 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 POTECB2RU33 542 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 AKR1B15C9JRZ8 316 aaPredicted RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms