RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 ASB3Q9Y575 518 aa11.89□□□□□ -0.51
CLSTN3-207ENST00000537408 PLCH1Q4KWH8 1693 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 SPDYE5A6NIY4 337 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 POLRMTO00411 1230 aaKnown RBP11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 CCT6AP40227 531 aaKnown RBP11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 ABL2P42684 1182 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 CCNG1P51959 295 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 TFCP2Q12800 502 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 AGBL2Q5U5Z8 902 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 TRPM8Q7Z2W7 1104 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 SP8Q8IXZ3 490 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 ECT2Q9H8V3 914 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 PICK1Q9NRD5 415 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 DLGAP2Q9P1A6 1054 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 WDR37Q9Y2I8 494 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 GMEB1Q9Y692 573 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 PDE2AO00408 941 aaPredicted RBP11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 TAF5LO75529 589 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 HEXIM1O94992 359 aaKnown RBP11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 GUCY2DQ02846 1103 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 MORC3Q14149 939 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 HDAC7Q8WUI4 952 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 NDNQ99608 321 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 PPP1R12CQ9BZL4 782 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 EPB41L5Q9HCM4 733 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 A0A1B0GVG6 124 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 CTNNA1P35221 906 aaKnown RBP11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 STX17P56962 302 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 MPP3Q13368 585 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 DOK7Q18PE1 504 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 MUM1Q2TAK8 710 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 HAUS3Q68CZ6 603 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 UNC45AQ9H3U1 944 aa11.88□□□□□ -0.51
CLSTN3-207ENST00000537408 RAD17O75943 681 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 CDC27P30260 824 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 ALDH5A1P51649 535 aaPredicted RBP11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 ADAM9Q13443 819 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 CFAP221Q4G0U5 840 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 KRI1Q8N9T8 703 aaKnown RBP11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 PROCA1Q8NCQ7 364 aaPredicted RBP11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 RAB17Q9H0T7 212 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 TAF6LQ9Y6J9 622 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 TRPM3Q9HCF6 1732 aaPredicted RBP11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 CTNND1O60716 968 aaKnown RBP11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 PAX3P23760 479 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 RASIP1Q5U651 963 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 SHC4Q6S5L8 630 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 DNAJC14Q6Y2X3 702 aaPredicted RBP11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 YIPF2Q9BWQ6 316 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 FAM192AQ9GZU8 254 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 IGF2BP3O00425 579 aaKnown RBP eCLIP11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 WFS1O76024 890 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 VIL1P09327 827 aaKnown RBP11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 PAEPP09466 180 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 ATP6V1C1P21283 382 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 DRD4P21917 467 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 TMOD1P28289 359 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 PBX1P40424 430 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 PSMD7P51665 324 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 PCMTD2Q9NV79 361 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 IQSEC3Q9UPP2 1182 aaPredicted RBP11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 MED23Q9ULK4 1368 aa11.87□□□□□ -0.51
CLSTN3-207ENST00000537408 MARCH6O60337 910 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 MAP7Q14244 749 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 ZNF662Q6ZS27 426 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 KRT23Q9C075 422 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 PLCB1Q9NQ66 1216 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 BACH1O14867 736 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 ASAP2O43150 1006 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 AKNAD1Q5T1N1 836 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 ANO7Q6IWH7 933 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 MTRQ99707 1265 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 UBE2OQ9C0C9 1292 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 PIDD1Q9HB75 910 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 LARSQ9P2J5 1176 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 RNF14Q9UBS8 474 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 CTNNAL1Q9UBT7 734 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 TSKSQ9UJT2 592 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 MROH5Q6ZUA9 1318 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 PRLRP16471 622 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 SP100P23497 879 aaPredicted RBP11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 PDIA3P30101 505 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 MSH2P43246 934 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 MRPS25P82663 173 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 TRIM28Q13263 835 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 PRPF4BQ13523 1007 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 COL9A3Q14050 684 aaPredicted RBP11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 SLC4A8Q2Y0W8 1093 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 ZNF594Q96JF6 807 aaPredicted RBP11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 XPO6Q96QU8 1125 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 ZNRF3Q9ULT6 936 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 NOVA2Q9UNW9 492 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 FAM237AA0A1B0GTK4 181 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 EYA2O00167 538 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 RAD23BP54727 409 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 TNNC1P63316 161 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 KIF23Q02241 960 aaPredicted RBP11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 LMNB2Q03252 620 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 UBXN1Q04323 297 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms