RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CLEC4GQ6UXB4 293 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 RPTNQ6XPR3 784 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PDZRN4Q6ZMN7 1036 aaPredicted RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 KRBA2Q6ZNG9 492 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 SPATA31D4Q6ZUB0 917 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 C16orf86Q6ZW13 317 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ANKS3Q6ZW76 656 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 FAM214BQ7L5A3 538 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ERMP1Q7Z2K6 904 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 KRT26Q7Z3Y9 468 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 POLNQ7Z5Q5 900 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 MILR1Q7Z6M3 343 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 C11orf96Q7Z7L8 435 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PCGF5Q86SE9 256 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ADGRE4PQ86SQ3 457 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 SKAP1Q86WV1 359 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 C1QL4Q86Z23 238 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 RIOX2Q8IUF8 465 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 DNAJC10Q8IXB1 793 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 AMOTL1Q8IY63 956 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 TMTC2Q8N394 836 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 LILRB2Q8N423 598 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 FIBCD1Q8N539 461 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 USHBP1Q8N6Y0 703 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 AMER2Q8N7J2 671 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 C19orf47Q8N9M1 422 aaKnown RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 SLC16A11Q8NCK7 471 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PHC3Q8NDX5 983 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 C3orf58Q8NDZ4 430 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 DNAJB8Q8NHS0 232 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 FEZF2Q8TBJ5 459 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 GRIN3AQ8TCU5 1115 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 CALML6Q8TD86 181 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ADAMTS17Q8TE56 1095 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 SH3RF3Q8TEJ3 882 aaPredicted RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PPM1EQ8WY54 764 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PPP1R14AQ96A00 147 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF669Q96BR6 464 aaPredicted RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ACSF2Q96CM8 615 aaPredicted RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 EVI5LQ96CN4 794 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZG16BQ96DA0 208 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 IL17RAQ96F46 866 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 TOE1Q96GM8 510 aaKnown RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 TMEM169Q96HH4 297 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 SGSM3Q96HU1 749 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 RCC1LQ96I51 464 aaKnown RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PAWRQ96IZ0 340 aaKnown RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 HHIPL1Q96JK4 782 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 SLC6A18Q96N87 628 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PTCHD1Q96NR3 888 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 DEPDC7Q96QD5 511 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 MPHOSPH9Q99550 1183 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 KIF2CQ99661 725 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 DPH2Q9BQC3 489 aaPredicted RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 HEPHQ9BQS7 1158 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ALG1Q9BT22 464 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 MTA3Q9BTC8 594 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 IER2Q9BTL4 223 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 SPON2Q9BUD6 331 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 MENTQ9BUN1 341 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 SGPP1Q9BX95 441 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 NT5C1AQ9BXI3 368 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 CARD11Q9BXL7 1154 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 SRRTQ9BXP5 876 aaKnown RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 LRRC3Q9BY71 257 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 REXO4Q9GZR2 422 aaKnown RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 KLC2Q9H0B6 622 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 XYLT2Q9H1B5 865 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 EPN3Q9H201 632 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 EPB41L1Q9H4G0 881 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 BCAS3Q9H6U6 928 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 CNNM2Q9H8M5 875 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 CNTD2Q9H8S5 307 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 EHMT1Q9H9B1 1298 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF408Q9H9D4 720 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 FBRSQ9HAH7 460 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 CYP4F11Q9HBI6 524 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ARNT2Q9HBZ2 717 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 TNFRSF12AQ9NP84 129 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 CASS4Q9NQ75 786 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 GNL3LQ9NVN8 582 aaKnown RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 FANCLQ9NW38 375 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 TMEM260Q9NX78 707 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 GFOD1Q9NXC2 390 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 SNTG2Q9NY99 539 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 KLHL14Q9P2G3 628 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ARHGAP28Q9P2N2 729 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 C11orf21Q9P2W6 132 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 IMPACTQ9P2X3 320 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PRKAG3Q9UGI9 489 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 SWAP70Q9UH65 585 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PUF60Q9UHX1 559 aaKnown RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 MCM8Q9UJA3 840 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 FBXO9Q9UK97 447 aaPredicted RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PLAAQ9Y263 795 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ATP8A1Q9Y2Q0 1164 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 GPR55Q9Y2T6 319 aaPredicted RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZDHHC9Q9Y397 364 aa0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 REXO2Q9Y3B8 237 aaKnown RBP0.74□□□□□ -2.29
RNU4-54P-201ENST00000516428 PCDHB14Q9Y5E9 798 aa0.74□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms