RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 IER2Q9BTL4 223 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 KATNBL1Q9H079 304 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 PRORYQ9H606 182 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 DNAJC18Q9H819 358 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 LTB4R2Q9NPC1 389 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 NGRNQ9NPE2 291 aaKnown RBP3.24□□□□□ -1.89
USP40-211ENST00000464956 TMEM9BQ9NQ34 198 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 ENTPD7Q9NQZ7 604 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 AAASQ9NRG9 546 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 TCP11L1Q9NUJ3 509 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 GNL3LQ9NVN8 582 aaKnown RBP3.24□□□□□ -1.89
USP40-211ENST00000464956 PUF60Q9UHX1 559 aaKnown RBP3.24□□□□□ -1.89
USP40-211ENST00000464956 PCDHB12Q9Y5F1 795 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 MRPL42Q9Y6G3 142 aaKnown RBP3.24□□□□□ -1.89
USP40-211ENST00000464956 HECTD1Q9ULT8 2610 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 PTPRFP10586 1907 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 FRYQ5TBA9 3013 aa3.24□□□□□ -1.89
USP40-211ENST00000464956 ABCA12Q86UK0 2595 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 MYO9AB2RTY4 2548 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 SPAARA0A1B0GVQ0 90 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 BLACEA4D250 179 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 VWA5AO00534 786 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 FSCN2O14926 492 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 EPN2O95208 641 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 TDGF1P13385 188 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 GBP2P32456 591 aaPredicted RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 THPOP40225 353 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 GSTO1P78417 241 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 SRSF5Q13243 272 aaKnown RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 BMS1Q14692 1282 aaKnown RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 MBTPS1Q14703 1052 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 PUM3Q15397 648 aaKnown RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 ABCB5Q2M3G0 1257 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 UAP1L1Q3KQV9 507 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 DUSP28Q4G0W2 176 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 PLA2G2CQ5R387 149 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 SPOUT1Q5T280 376 aaKnown RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 SPTY2D1Q68D10 685 aaPredicted RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 GDF6Q6KF10 455 aaPredicted RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 LMBR1LQ6UX01 489 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 KSR2Q6VAB6 950 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 CCNI2Q6ZMN8 369 aaPredicted RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 MAMSTRQ6ZN01 415 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 KIAA1211Q6ZU35 1233 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 RAB44Q7Z6P3 723 aaPredicted RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 METTL16Q86W50 562 aaKnown RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 LONP2Q86WA8 852 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 TEX11Q8IYF3 940 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 THNSL1Q8IYQ7 743 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 C12orf76Q8N812 135 aaPredicted RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 C7orf31Q8N865 590 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 STAMQ92783 540 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 ZNF689Q96CS4 500 aaPredicted RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 POM121Q96HA1 1249 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 CTAGE1Q96RT6 745 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 TCF25Q9BQ70 676 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 NOL10Q9BSC4 688 aaKnown RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 DDX23Q9BUQ8 820 aaKnown RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 REPIN1Q9BWE0 567 aaKnown RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 TEX13BQ9BXU2 312 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 USP26Q9BXU7 913 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 TRIM4Q9C037 500 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 SMOC1Q9H4F8 434 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 ZNF768Q9H5H4 540 aaKnown RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 RC3H2Q9HBD1 1191 aaKnown RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 FAM217BQ9NTX9 383 aaPredicted RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 TMEM260Q9NX78 707 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 FBXO40Q9UH90 709 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 DENND2AQ9ULE3 1009 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 MTF2Q9Y483 593 aaPredicted RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 CTDP1Q9Y5B0 961 aaPredicted RBP3.23□□□□□ -1.89
USP40-211ENST00000464956 STK24Q9Y6E0 443 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 LOC400499M0QZD8 3231 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 TRIOO75962 3097 aa3.23□□□□□ -1.89
USP40-211ENST00000464956 PI4KAP2A4QPH2 592 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 CHURC1-FNTBB4DL54 471 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 RRP8O43159 456 aaKnown RBP3.22□□□□□ -1.89
USP40-211ENST00000464956 DGKIO75912 1065 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 FGF18O76093 207 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 PDE8BO95263 885 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 C8BP07358 591 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 LDHCP07864 332 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 TNFRSF8P28908 595 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 CXCL12P48061 93 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 SLC4A3P48751 1232 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 FNTBP49356 437 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 CASP7P55210 303 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 ERVFC1P60507 584 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 PFKPQ01813 784 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 RHDQ02161 417 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 LMOD3Q0VAK6 560 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 LETM2Q2VYF4 491 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 CERKLQ49MI3 558 aaPredicted RBP3.22□□□□□ -1.89
USP40-211ENST00000464956 PAN2Q504Q3 1202 aaKnown RBP3.22□□□□□ -1.89
USP40-211ENST00000464956 SLC44A4Q53GD3 710 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 CC2D1BQ5T0F9 858 aaKnown RBP3.22□□□□□ -1.89
USP40-211ENST00000464956 DUSP27Q5VZP5 1158 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 TCEAL6Q6IPX3 200 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 TATDN1Q6P1N9 297 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 TRAF7Q6Q0C0 670 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms