RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 EFCAB8A8MWE9 144 aa15.49■□□□□ 0.07
SNCA-204ENST00000394989 CAPN2P17655 700 aa15.49■□□□□ 0.07
SNCA-204ENST00000394989 HNRNPH2P55795 449 aaKnown RBP15.49■□□□□ 0.07
SNCA-204ENST00000394989 MCTP2Q6DN12 878 aa15.49■□□□□ 0.07
SNCA-204ENST00000394989 MYOCDQ8IZQ8 938 aa15.49■□□□□ 0.07
SNCA-204ENST00000394989 MNS1Q8NEH6 495 aa15.49■□□□□ 0.07
SNCA-204ENST00000394989 GLIS2Q9BZE0 524 aaPredicted RBP15.49■□□□□ 0.07
SNCA-204ENST00000394989 ZNF446Q9NWS9 450 aa15.49■□□□□ 0.07
SNCA-204ENST00000394989 VAV3Q9UKW4 847 aa15.49■□□□□ 0.07
SNCA-204ENST00000394989 HERVK_113P62684 666 aa15.49■□□□□ 0.07
SNCA-204ENST00000394989 PPP2R3AQ06190 1150 aa15.49■□□□□ 0.07
SNCA-204ENST00000394989 FIGNQ5HY92 759 aa15.49■□□□□ 0.07
SNCA-204ENST00000394989 SLC35F6Q8N357 371 aa15.49■□□□□ 0.07
SNCA-204ENST00000394989 NUP58Q9BVL2 599 aa15.49■□□□□ 0.07
SNCA-204ENST00000394989 TFR2Q9UP52 801 aa15.49■□□□□ 0.07
SNCA-204ENST00000394989 IGLV3-22A0A075B6J6 115 aa15.48■□□□□ 0.07
SNCA-204ENST00000394989 FRMD3A2A2Y4 597 aa15.48■□□□□ 0.07
SNCA-204ENST00000394989 MEIS1O00470 390 aa15.48■□□□□ 0.07
SNCA-204ENST00000394989 NCAPH2Q6IBW4 605 aa15.48■□□□□ 0.07
SNCA-204ENST00000394989 FOXR2Q6PJQ5 311 aa15.48■□□□□ 0.07
SNCA-204ENST00000394989 ZCCHC17Q9NP64 241 aaKnown RBP15.48■□□□□ 0.07
SNCA-204ENST00000394989 ABCB11O95342 1321 aa15.48■□□□□ 0.07
SNCA-204ENST00000394989 A0A1W2PQJ5 194 aa15.48■□□□□ 0.07
SNCA-204ENST00000394989 CYP3A4P08684 503 aa15.48■□□□□ 0.07
SNCA-204ENST00000394989 RPA1P27694 616 aa15.48■□□□□ 0.07
SNCA-204ENST00000394989 ZBED6P86452 979 aa15.48■□□□□ 0.07
SNCA-204ENST00000394989 MAN2A1Q16706 1144 aa15.48■□□□□ 0.07
SNCA-204ENST00000394989 UBXN4Q92575 508 aa15.48■□□□□ 0.07
SNCA-204ENST00000394989 SLC26A4O43511 780 aa15.48■□□□□ 0.07
SNCA-204ENST00000394989 ZYXQ15942 572 aaKnown RBP15.48■□□□□ 0.07
SNCA-204ENST00000394989 HAUS3Q68CZ6 603 aa15.48■□□□□ 0.07
SNCA-204ENST00000394989 SLC30A10Q6XR72 485 aa15.48■□□□□ 0.07
SNCA-204ENST00000394989 CCDC84Q86UT8 332 aaPredicted RBP15.48■□□□□ 0.07
SNCA-204ENST00000394989 SCFD1Q8WVM8 642 aa15.48■□□□□ 0.07
SNCA-204ENST00000394989 ZBED3Q96IU2 234 aaPredicted RBP15.48■□□□□ 0.07
SNCA-204ENST00000394989 FAM20AQ96MK3 541 aa15.48■□□□□ 0.07
SNCA-204ENST00000394989 GOPCQ9HD26 462 aa15.48■□□□□ 0.07
SNCA-204ENST00000394989 ZNRF3Q9ULT6 936 aa15.48■□□□□ 0.07
SNCA-204ENST00000394989 SCAF8Q9UPN6 1271 aaKnown RBP15.48■□□□□ 0.07
SNCA-204ENST00000394989 SHTN1A0MZ66 631 aa15.47■□□□□ 0.07
SNCA-204ENST00000394989 TBC1D12O60347 775 aa15.47■□□□□ 0.07
SNCA-204ENST00000394989 HOXA7P31268 230 aaPredicted RBP15.47■□□□□ 0.07
SNCA-204ENST00000394989 KIF4BQ2VIQ3 1234 aa15.47■□□□□ 0.07
SNCA-204ENST00000394989 NBPF9Q3BBW0 867 aa15.47■□□□□ 0.07
SNCA-204ENST00000394989 FKBP15Q5T1M5 1219 aa15.47■□□□□ 0.07
SNCA-204ENST00000394989 CCDC174Q6PII3 467 aa15.47■□□□□ 0.07
SNCA-204ENST00000394989 CCDC155Q8N6L0 562 aa15.47■□□□□ 0.07
SNCA-204ENST00000394989 MTMR14Q8NCE2 650 aa15.47■□□□□ 0.07
SNCA-204ENST00000394989 RANBP17Q9H2T7 1088 aaKnown RBP15.47■□□□□ 0.07
SNCA-204ENST00000394989 BMP2KQ9NSY1 1161 aaPredicted RBP15.47■□□□□ 0.07
SNCA-204ENST00000394989 TFRCP02786 760 aaKnown RBP15.47■□□□□ 0.07
SNCA-204ENST00000394989 TNNT3P45378 269 aaPredicted RBP15.47■□□□□ 0.07
SNCA-204ENST00000394989 FKBP1CQ5VVH2 108 aa15.47■□□□□ 0.07
SNCA-204ENST00000394989 RSRC2Q7L4I2 434 aaKnown RBP15.47■□□□□ 0.07
SNCA-204ENST00000394989 PCMTD1Q96MG8 357 aaPredicted RBP15.47■□□□□ 0.07
SNCA-204ENST00000394989 WDR18Q9BV38 432 aa15.47■□□□□ 0.07
SNCA-204ENST00000394989 KCTD10Q9H3F6 313 aa15.47■□□□□ 0.07
SNCA-204ENST00000394989 EML1O00423 815 aa15.46■□□□□ 0.07
SNCA-204ENST00000394989 WNT10BO00744 389 aa15.46■□□□□ 0.07
SNCA-204ENST00000394989 CFBP00751 764 aa15.46■□□□□ 0.07
SNCA-204ENST00000394989 CAP2P40123 477 aa15.46■□□□□ 0.07
SNCA-204ENST00000394989 CASP5P51878 434 aa15.46■□□□□ 0.07
SNCA-204ENST00000394989 CXCL9Q07325 125 aa15.46■□□□□ 0.07
SNCA-204ENST00000394989 HERC4Q5GLZ8 1057 aaPredicted RBP15.46■□□□□ 0.07
SNCA-204ENST00000394989 CCDC65Q8IXS2 484 aa15.46■□□□□ 0.07
SNCA-204ENST00000394989 VCPKMTQ9H867 229 aa15.46■□□□□ 0.07
SNCA-204ENST00000394989 NHEJ1Q9H9Q4 299 aaPredicted RBP15.46■□□□□ 0.07
SNCA-204ENST00000394989 RBBP6Q7Z6E9 1792 aaKnown RBP15.46■□□□□ 0.07
SNCA-204ENST00000394989 PABPC4Q13310 644 aaKnown RBP eCLIP15.46■□□□□ 0.07
SNCA-204ENST00000394989 GIT2Q14161 759 aa15.46■□□□□ 0.07
SNCA-204ENST00000394989 FAM83AQ86UY5 434 aa15.46■□□□□ 0.07
SNCA-204ENST00000394989 NELFCDQ8IXH7 590 aa15.46■□□□□ 0.07
SNCA-204ENST00000394989 AGBL3Q8NEM8 1001 aa15.46■□□□□ 0.07
SNCA-204ENST00000394989 FAM207AQ9NSI2 230 aaPredicted RBP15.46■□□□□ 0.07
SNCA-204ENST00000394989 FBXO28Q9NVF7 368 aa15.46■□□□□ 0.07
SNCA-204ENST00000394989 PITPNM2Q9BZ72 1349 aa15.46■□□□□ 0.06
SNCA-204ENST00000394989 RCCD1A6NED2 376 aa15.46■□□□□ 0.06
SNCA-204ENST00000394989 SEC31AO94979 1220 aaKnown RBP15.46■□□□□ 0.06
SNCA-204ENST00000394989 FGFR1OPO95684 399 aaKnown RBP15.46■□□□□ 0.06
SNCA-204ENST00000394989 CLCN6P51797 869 aa15.46■□□□□ 0.06
SNCA-204ENST00000394989 GYS2P54840 703 aa15.46■□□□□ 0.06
SNCA-204ENST00000394989 FKBP3Q00688 224 aaKnown RBP15.46■□□□□ 0.06
SNCA-204ENST00000394989 SYT2Q8N9I0 419 aaPredicted RBP15.46■□□□□ 0.06
SNCA-204ENST00000394989 TSG101Q99816 390 aa15.46■□□□□ 0.06
SNCA-204ENST00000394989 PLEKP08567 350 aaPredicted RBP15.45■□□□□ 0.06
SNCA-204ENST00000394989 CYP4A11Q02928 519 aa15.45■□□□□ 0.06
SNCA-204ENST00000394989 TSR1Q2NL82 804 aaKnown RBP15.45■□□□□ 0.06
SNCA-204ENST00000394989 BCAS3Q9H6U6 928 aa15.45■□□□□ 0.06
SNCA-204ENST00000394989 TRAF5O00463 557 aa15.45■□□□□ 0.06
SNCA-204ENST00000394989 NIM1KQ8IY84 436 aa15.45■□□□□ 0.06
SNCA-204ENST00000394989 IPO4Q8TEX9 1081 aaKnown RBP15.45■□□□□ 0.06
SNCA-204ENST00000394989 REEP2Q9BRK0 252 aa15.45■□□□□ 0.06
SNCA-204ENST00000394989 EMILIN3Q9NT22 766 aa15.45■□□□□ 0.06
SNCA-204ENST00000394989 CALCOCO1Q9P1Z2 691 aa15.45■□□□□ 0.06
SNCA-204ENST00000394989 MYO1AQ9UBC5 1043 aa15.45■□□□□ 0.06
SNCA-204ENST00000394989 GUCA1BQ9UMX6 200 aa15.45■□□□□ 0.06
SNCA-204ENST00000394989 PLAGL2Q9UPG8 496 aa15.45■□□□□ 0.06
SNCA-204ENST00000394989 COL4A3BPQ9Y5P4 624 aa15.45■□□□□ 0.06
SNCA-204ENST00000394989 CTAGE9A4FU28 777 aa15.44■□□□□ 0.06
SNCA-204ENST00000394989 ZNF263O14978 683 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms