RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 POLR3CQ9BUI4 534 aaPredicted RBP13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 MLH3Q9UHC1 1453 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 PCCAP05165 728 aaPredicted RBP13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 BASP1P80723 227 aaKnown RBP13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 ATP8B1O43520 1251 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 FGAP02671 866 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 UBE3CQ15386 1083 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 ZNF526Q8TF50 670 aaPredicted RBP13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 GCNT4Q9P109 453 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 LEMD3Q9Y2U8 911 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 FIS1Q9Y3D6 152 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 ADGBQ8N7X0 1667 aa13.82□□□□□ -0.2
CCDC88C-204ENST00000389857 PCGF5Q86SE9 256 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 IQANK1A0A1B0GTG1 560 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 TAC1P20366 129 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 EEF1DP29692 281 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 CASP14P31944 242 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 ADD1P35611 737 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 DEUP1Q05D60 604 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 ALCAMQ13740 583 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 ZNF827Q17R98 1081 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 SUPT20HL1Q3ZLR7 823 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 ZNF496Q96IT1 587 aaPredicted RBP13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 IFNAR2P48551 515 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 IFT88Q13099 833 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 EPB41L5Q9HCM4 733 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 A0A1W2PQ27 194 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 A0A1W2PQ64 194 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 A0A1W2PQD8 194 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 BTBD18B2RXH4 712 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 CCT5P48643 541 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 STAT2P52630 851 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 YWHAHQ04917 246 aaPredicted RBP13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 KCTD16Q68DU8 428 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 TTC19Q6DKK2 380 aaPredicted RBP13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 TRIM67Q6ZTA4 783 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 TFAMQ00059 246 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 KRT80Q6KB66 452 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 TEX12Q9BXU0 123 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 RNF26Q9BY78 433 aaPredicted RBP13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 DONSONQ9NYP3 566 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 AP1ARQ63HQ0 302 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 TMC4Q7Z404 712 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 SEPT8Q92599 483 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 UPF3AQ9H1J1 476 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 FGFR1OP2Q9NVK5 253 aa13.81□□□□□ -0.2
CCDC88C-204ENST00000389857 GOLGA8SH3BPF8 625 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 DYNLT1P63172 113 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 PTH1RQ03431 593 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 GLE1Q53GS7 698 aaKnown RBP13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 ATP8A1Q9Y2Q0 1164 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 CIAO1O76071 339 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 PDIA3P30101 505 aaKnown RBP13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 ZBTB18Q99592 522 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 RRAGDQ9NQL2 400 aaPredicted RBP13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 PHLPP2Q6ZVD8 1323 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 PSAPP07602 524 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 PSMD2Q13200 908 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 GDAP1Q8TB36 358 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 SCOCQ9UIL1 159 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 IPO5O00410 1097 aaKnown RBP13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 SERPING1P05155 500 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 PLS3P13797 630 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 NCF2P19878 526 aaPredicted RBP13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 CEP170P1Q96L14 293 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 UBE2TQ9NPD8 197 aaPredicted RBP13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 MAGED2Q9UNF1 606 aaPredicted RBP13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 SLC35F6Q8N357 371 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 NPR1P16066 1061 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 RBL2Q08999 1139 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 SCRN1Q12765 414 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 FRA10AC1Q70Z53 315 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 TESK2Q96S53 571 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 CALN1Q9BXU9 219 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 RPF1Q9H9Y2 349 aaKnown RBP13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 MTMR6Q9Y217 621 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 KIAA0556O60303 1618 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 CARMIL3Q8ND23 1372 aa13.8□□□□□ -0.2
CCDC88C-204ENST00000389857 CDC37Q16543 378 aaPredicted RBP13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 CYP4F22Q6NT55 531 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 MAP3K15Q6ZN16 1313 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 PLTPP55058 493 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 TCP11X2Q5H9J9 407 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 MYCBPQ99417 103 aaPredicted RBP13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 TRAIPQ9BWF2 469 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 ANLNQ9NQW6 1124 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 LCMT1Q9UIC8 334 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 ERBB4Q15303 1308 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 DNMT1P26358 1616 aaKnown RBP13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 LRRN2O75325 713 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 RWDD2AQ9UIY3 292 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 HSPA2P54652 639 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 C7orf31Q8N865 590 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 SSH3Q8TE77 659 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 ZNF212Q9UDV6 495 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 MYOM2P54296 1465 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 ZNF500O60304 480 aaPredicted RBP13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 TRPA1O75762 1119 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 ELF1P32519 619 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 KCTD1Q719H9 257 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms