RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 XAB2Q9HCS7 855 aaKnown RBP16.06■□□□□ 0.16
CHD4-201ENST00000357008 KRT1P04264 644 aa16.06■□□□□ 0.16
CHD4-201ENST00000357008 PLCB4Q15147 1175 aa16.06■□□□□ 0.16
CHD4-201ENST00000357008 AP1M1Q9BXS5 423 aa16.06■□□□□ 0.16
CHD4-201ENST00000357008 ESRRAP11474 423 aaPredicted RBP16.05■□□□□ 0.16
CHD4-201ENST00000357008 CDC25AP30304 524 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 TNFAIP1Q13829 316 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 NCAPGQ9BPX3 1015 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 PLAAQ9Y263 795 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 CHUKO15111 745 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 CLIC2O15247 247 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 PLCG1P19174 1290 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 ARHGEF25Q86VW2 580 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 CXorf38Q8TB03 319 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 GDAP1Q8TB36 358 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 NACC1Q96RE7 527 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 BPIFA3Q9BQP9 254 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 ZSWIM5Q9P217 1185 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 ANO9A1A5B4 782 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 ALKBH5Q6P6C2 394 aaKnown RBP16.05■□□□□ 0.16
CHD4-201ENST00000357008 PI4K2BQ8TCG2 481 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 DIS3Q9Y2L1 958 aaKnown RBP16.05■□□□□ 0.16
CHD4-201ENST00000357008 POLE2P56282 527 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 NBPF9Q3BBW0 867 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 NUGGCQ68CJ6 796 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 TBC1D1Q86TI0 1168 aaPredicted RBP16.05■□□□□ 0.16
CHD4-201ENST00000357008 SMYD2Q9NRG4 433 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 GOLGA8CPA6NN73 597 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 GYS2P54840 703 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 PHEXP78562 749 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 PPP4R3CPQ6ZMV5 832 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 OSBPL5Q9H0X9 879 aaPredicted RBP16.05■□□□□ 0.16
CHD4-201ENST00000357008 ZNF804BA4D1E1 1349 aa16.05■□□□□ 0.16
CHD4-201ENST00000357008 CACNB1Q02641 598 aaPredicted RBP16.04■□□□□ 0.16
CHD4-201ENST00000357008 PDCLQ13371 301 aa16.04■□□□□ 0.16
CHD4-201ENST00000357008 TOGARAM2Q6ZUX3 1019 aa16.04■□□□□ 0.16
CHD4-201ENST00000357008 RSPH3Q86UC2 560 aa16.04■□□□□ 0.16
CHD4-201ENST00000357008 ATP6V0A1Q93050 837 aa16.04■□□□□ 0.16
CHD4-201ENST00000357008 PUS7LQ9H0K6 701 aaKnown RBP16.04■□□□□ 0.16
CHD4-201ENST00000357008 UBE2TQ9NPD8 197 aaPredicted RBP16.04■□□□□ 0.16
CHD4-201ENST00000357008 FGFR1OP2Q9NVK5 253 aa16.04■□□□□ 0.16
CHD4-201ENST00000357008 CA4P22748 312 aa16.04■□□□□ 0.16
CHD4-201ENST00000357008 ICE2Q659A1 982 aa16.04■□□□□ 0.16
CHD4-201ENST00000357008 RAB44Q7Z6P3 723 aaPredicted RBP16.04■□□□□ 0.16
CHD4-201ENST00000357008 ZNF577Q9BSK1 485 aa16.04■□□□□ 0.16
CHD4-201ENST00000357008 PODXLO00592 558 aa16.04■□□□□ 0.16
CHD4-201ENST00000357008 SRGAP2BP0DMP2 458 aa16.04■□□□□ 0.16
CHD4-201ENST00000357008 SYNMO15061 1565 aa16.04■□□□□ 0.16
CHD4-201ENST00000357008 TTLL1O95922 423 aa16.04■□□□□ 0.16
CHD4-201ENST00000357008 ABCB5Q2M3G0 1257 aa16.04■□□□□ 0.16
CHD4-201ENST00000357008 ADAMTS1Q9UHI8 967 aa16.04■□□□□ 0.16
CHD4-201ENST00000357008 CCPG1Q9ULG6 757 aa16.04■□□□□ 0.16
CHD4-201ENST00000357008 CLASP1Q7Z460 1538 aa16.04■□□□□ 0.16
CHD4-201ENST00000357008 ADAMTS12P58397 1594 aa16.04■□□□□ 0.16
CHD4-201ENST00000357008 BASP1P80723 227 aaKnown RBP16.04■□□□□ 0.16
CHD4-201ENST00000357008 RHOT2Q8IXI1 618 aa16.04■□□□□ 0.16
CHD4-201ENST00000357008 PDLIM2Q96JY6 352 aa16.04■□□□□ 0.16
CHD4-201ENST00000357008 PACSIN2Q9UNF0 486 aaPredicted RBP16.04■□□□□ 0.16
CHD4-201ENST00000357008 IPO5O00410 1097 aaKnown RBP16.03■□□□□ 0.16
CHD4-201ENST00000357008 DCTN3O75935 186 aa16.03■□□□□ 0.16
CHD4-201ENST00000357008 OATP04181 439 aa16.03■□□□□ 0.16
CHD4-201ENST00000357008 NIM1KQ8IY84 436 aa16.03■□□□□ 0.16
CHD4-201ENST00000357008 ELAC2Q9BQ52 826 aaKnown RBP16.03■□□□□ 0.16
CHD4-201ENST00000357008 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.03■□□□□ 0.162e-9■■■■□ 22
CHD4-201ENST00000357008 LMNAP02545 664 aaKnown RBP16.03■□□□□ 0.16
CHD4-201ENST00000357008 ACTN1P12814 892 aa16.03■□□□□ 0.16
CHD4-201ENST00000357008 DNAJC24Q6P3W2 148 aa16.03■□□□□ 0.16
CHD4-201ENST00000357008 CDC37Q16543 378 aaPredicted RBP16.03■□□□□ 0.16
CHD4-201ENST00000357008 ZNF449Q6P9G9 518 aa16.03■□□□□ 0.16
CHD4-201ENST00000357008 MLH3Q9UHC1 1453 aa16.03■□□□□ 0.16
CHD4-201ENST00000357008 PPIP5K2O43314 1243 aa16.03■□□□□ 0.16
CHD4-201ENST00000357008 APOEP02649 317 aa16.03■□□□□ 0.16
CHD4-201ENST00000357008 FAM160B1Q5W0V3 765 aa16.03■□□□□ 0.16
CHD4-201ENST00000357008 ABHD10Q9NUJ1 306 aa16.03■□□□□ 0.16
CHD4-201ENST00000357008 KPNA2P52292 529 aaKnown RBP16.03■□□□□ 0.16
CHD4-201ENST00000357008 RSBN1LQ6PCB5 846 aaPredicted RBP16.03■□□□□ 0.16
CHD4-201ENST00000357008 AIFM3Q96NN9 605 aa16.03■□□□□ 0.16
CHD4-201ENST00000357008 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.03■□□□□ 0.16
CHD4-201ENST00000357008 ABCD1P33897 745 aa16.02■□□□□ 0.16
CHD4-201ENST00000357008 RWDD2BP57060 319 aa16.02■□□□□ 0.16
CHD4-201ENST00000357008 DACT3Q96B18 629 aaPredicted RBP16.02■□□□□ 0.16
CHD4-201ENST00000357008 PIGSQ96S52 555 aa16.02■□□□□ 0.16
CHD4-201ENST00000357008 SERPINI1Q99574 410 aa16.02■□□□□ 0.16
CHD4-201ENST00000357008 FGGP02679 453 aa16.02■□□□□ 0.16
CHD4-201ENST00000357008 MMEP08473 750 aa16.02■□□□□ 0.16
CHD4-201ENST00000357008 PLA2G4BP0C869 781 aa16.02■□□□□ 0.16
CHD4-201ENST00000357008 MXI1P50539 228 aa16.02■□□□□ 0.16
CHD4-201ENST00000357008 SCNN1DP51172 638 aa16.02■□□□□ 0.16
CHD4-201ENST00000357008 PDCD2Q16342 344 aaPredicted RBP16.02■□□□□ 0.16
CHD4-201ENST00000357008 ATG16L1Q676U5 607 aa16.02■□□□□ 0.16
CHD4-201ENST00000357008 KRT80Q6KB66 452 aa16.02■□□□□ 0.16
CHD4-201ENST00000357008 CENPUQ71F23 418 aa16.02■□□□□ 0.16
CHD4-201ENST00000357008 PITPNM3Q9BZ71 974 aa16.02■□□□□ 0.16
CHD4-201ENST00000357008 MRPL46Q9H2W6 279 aaKnown RBP16.02■□□□□ 0.16
CHD4-201ENST00000357008 KMT5AQ9NQR1 393 aa16.02■□□□□ 0.16
CHD4-201ENST00000357008 TLK1Q9UKI8 766 aa16.02■□□□□ 0.16
CHD4-201ENST00000357008 IGSF1Q8N6C5 1336 aa16.02■□□□□ 0.16
CHD4-201ENST00000357008 PTPREP23469 700 aa16.02■□□□□ 0.16
CHD4-201ENST00000357008 TFDP1Q14186 410 aa16.02■□□□□ 0.16
CHD4-201ENST00000357008 ZNF579Q8NAF0 562 aaKnown RBP16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms