RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 AMPD2Q01433 879 aa16.47■□□□□ 0.23
CLCNKA-201ENST00000331433 HAUS3Q68CZ6 603 aa16.47■□□□□ 0.23
CLCNKA-201ENST00000331433 KRT26Q7Z3Y9 468 aa16.47■□□□□ 0.23
CLCNKA-201ENST00000331433 CCDC170Q8IYT3 715 aa16.47■□□□□ 0.23
CLCNKA-201ENST00000331433 HDAC6Q9UBN7 1215 aa16.47■□□□□ 0.23
CLCNKA-201ENST00000331433 ZBTB12Q9Y330 459 aaPredicted RBP16.47■□□□□ 0.23
CLCNKA-201ENST00000331433 COL4A3BPQ9Y5P4 624 aa16.47■□□□□ 0.23
CLCNKA-201ENST00000331433 DUSP10Q9Y6W6 482 aa16.47■□□□□ 0.23
CLCNKA-201ENST00000331433 EIF3CLB5ME19 914 aaKnown RBP16.47■□□□□ 0.23
CLCNKA-201ENST00000331433 MMP14P50281 582 aa16.47■□□□□ 0.23
CLCNKA-201ENST00000331433 PABPC4Q13310 644 aaKnown RBP eCLIP16.47■□□□□ 0.23
CLCNKA-201ENST00000331433 CDAN1Q8IWY9 1227 aa16.47■□□□□ 0.23
CLCNKA-201ENST00000331433 SMCR8Q8TEV9 937 aaPredicted RBP16.47■□□□□ 0.23
CLCNKA-201ENST00000331433 SCFD1Q8WVM8 642 aa16.47■□□□□ 0.23
CLCNKA-201ENST00000331433 EIF3CQ99613 913 aaKnown RBP16.47■□□□□ 0.23
CLCNKA-201ENST00000331433 MYO6Q9UM54 1294 aa16.47■□□□□ 0.23
CLCNKA-201ENST00000331433 PLAGL2Q9UPG8 496 aa16.47■□□□□ 0.23
CLCNKA-201ENST00000331433 PSMD14O00487 310 aa16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 ZNF263O14978 683 aa16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 MSH4O15457 936 aa16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 IPO7O95373 1038 aaKnown RBP16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 FOSP01100 380 aaPredicted RBP16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 SPATA31C1P0DKV0 1188 aa16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 CYP4A11Q02928 519 aa16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 TUBB2AQ13885 445 aa16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 CCDC40Q4G0X9 1142 aa16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 FAM83BQ5T0W9 1011 aa16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 CC2D1AQ6P1N0 951 aaPredicted RBP16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 RSBN1LQ6PCB5 846 aaPredicted RBP16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 CCDC84Q86UT8 332 aaPredicted RBP16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 CCDC42Q96M95 316 aa16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 TUBB2BQ9BVA1 445 aa16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 ARHGAP20Q9P2F6 1191 aa16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 HERC5Q9UII4 1024 aaKnown RBP16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 ATP1A1P05023 1023 aaKnown RBP16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 STAT2P52630 851 aa16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 SLC30A10Q6XR72 485 aa16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 RRAGAQ7L523 313 aa16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 ANKZF1Q9H8Y5 726 aa16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 ZNF277Q9NRM2 450 aaPredicted RBP16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 ZNF70Q9UC06 446 aaPredicted RBP16.46■□□□□ 0.23
CLCNKA-201ENST00000331433 LRRC53A6NM62 1247 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 TBX3O15119 743 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 KRT86O43790 486 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 HOXA7P31268 230 aaPredicted RBP16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 CASP5P51878 434 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 CDK17Q00537 523 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 DLGAP5Q15398 846 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 ZYXQ15942 572 aaKnown RBP16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 WHAMMP3Q1A5X7 153 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 SAMD1Q6SPF0 538 aaPredicted RBP16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 ERMNQ8TAM6 284 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 TBC1D5Q92609 795 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 VEZTQ9HBM0 779 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 EMILIN3Q9NT22 766 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 STK32BQ9NY57 414 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 COL2A1P02458 1487 aaPredicted RBP16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 FRMD3A2A2Y4 597 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 RPA1P27694 616 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 HNRNPH3P31942 346 aaKnown RBP16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 ZNF76P36508 570 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 CCDC174Q6PII3 467 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 FOXR2Q6PJQ5 311 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 LARGE2Q8N3Y3 721 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 IQCDQ96DY2 449 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 KCTD10Q9H3F6 313 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 ARHGEF10LQ9HCE6 1279 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 VAV3Q9UKW4 847 aa16.45■□□□□ 0.22
CLCNKA-201ENST00000331433 MACROD2A1Z1Q3 448 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 CTAGE15A4D2H0 777 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 SASH3O75995 380 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 CFBP00751 764 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 CTAGE8P0CG41 777 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 CIITAP33076 1130 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 KCNMA1Q12791 1236 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 MCTP2Q6DN12 878 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 TRAPPC11Q7Z392 1133 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 CTAGE6Q86UF2 777 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 CTAGE4Q8IX94 777 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 BAP1Q92560 729 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 POLD4Q9HCU8 107 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 ZBTB21Q9ULJ3 1066 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 DNM3Q9UQ16 869 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 COL4A5P29400 1685 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 CNTNAP1P78357 1384 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 SRGAP2O75044 1071 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 TBC1D8O95759 1140 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 EIF4A3P38919 411 aaKnown RBP16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 PLA2G4AP47712 749 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 GIT2Q14161 759 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 ZNF662Q6ZS27 426 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 MIGA2Q7L4E1 593 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 TTLL6Q8N841 843 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 FAM151AQ8WW52 585 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 FAM20AQ96MK3 541 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 PNKPQ96T60 521 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 REEP2Q9BRK0 252 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 TMEM39BQ9GZU3 492 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 ZMYND15Q9H091 742 aa16.44■□□□□ 0.22
CLCNKA-201ENST00000331433 TMX2Q9Y320 296 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms