RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PTPRFP10586 1907 aa18.43■□□□□ 0.54
USP4-201ENST00000265560 RHOBTB3O94955 611 aa18.43■□□□□ 0.54
USP4-201ENST00000265560 ERCC5P28715 1186 aaPredicted RBP18.43■□□□□ 0.54
USP4-201ENST00000265560 PGM5Q15124 567 aa18.43■□□□□ 0.54
USP4-201ENST00000265560 TEX13BQ9BXU2 312 aa18.43■□□□□ 0.54
USP4-201ENST00000265560 BHMT2Q9H2M3 363 aa18.43■□□□□ 0.54
USP4-201ENST00000265560 CUEDC2Q9H467 287 aa18.43■□□□□ 0.54
USP4-201ENST00000265560 A1CFQ9NQ94 594 aaKnown RBP18.43■□□□□ 0.54
USP4-201ENST00000265560 TELO2Q9Y4R8 837 aa18.43■□□□□ 0.54
USP4-201ENST00000265560 SFI1A8K8P3 1242 aa18.43■□□□□ 0.54
USP4-201ENST00000265560 CNTN2Q02246 1040 aa18.43■□□□□ 0.54
USP4-201ENST00000265560 SPATA1Q5VX52 437 aa18.43■□□□□ 0.54
USP4-201ENST00000265560 ERO1BQ86YB8 467 aa18.43■□□□□ 0.54
USP4-201ENST00000265560 EHMT1Q9H9B1 1298 aa18.43■□□□□ 0.54
USP4-201ENST00000265560 IQCA1LA6NCM1 817 aa18.42■□□□□ 0.54
USP4-201ENST00000265560 TEX33O43247 280 aa18.42■□□□□ 0.54
USP4-201ENST00000265560 KRT18P05783 430 aaKnown RBP18.42■□□□□ 0.54
USP4-201ENST00000265560 ZNF18P17022 549 aa18.42■□□□□ 0.54
USP4-201ENST00000265560 GJA5P36382 358 aa18.42■□□□□ 0.54
USP4-201ENST00000265560 TKFCQ3LXA3 575 aa18.42■□□□□ 0.54
USP4-201ENST00000265560 ADSSL1Q8N142 457 aa18.42■□□□□ 0.54
USP4-201ENST00000265560 RBM46Q8TBY0 533 aaKnown RBP18.42■□□□□ 0.54
USP4-201ENST00000265560 ZC3H15Q8WU90 426 aaKnown RBP18.42■□□□□ 0.54
USP4-201ENST00000265560 PDCD2LQ9BRP1 358 aa18.42■□□□□ 0.54
USP4-201ENST00000265560 PXMP2Q9NR77 195 aa18.42■□□□□ 0.54
USP4-201ENST00000265560 ADAMTS5Q9UNA0 930 aa18.42■□□□□ 0.54
USP4-201ENST00000265560 SAMM50Q9Y512 469 aa18.42■□□□□ 0.54
USP4-201ENST00000265560 TBX3O15119 743 aa18.42■□□□□ 0.54
USP4-201ENST00000265560 NKRFO15226 690 aaKnown RBP eCLIP18.42■□□□□ 0.54
USP4-201ENST00000265560 ITGB3BPQ13352 177 aaPredicted RBP18.42■□□□□ 0.54
USP4-201ENST00000265560 GIMAP8Q8ND71 665 aaPredicted RBP18.42■□□□□ 0.54
USP4-201ENST00000265560 IRX3P78415 501 aaPredicted RBP18.41■□□□□ 0.54
USP4-201ENST00000265560 MTMR1Q13613 665 aa18.41■□□□□ 0.54
USP4-201ENST00000265560 ARSHQ5FYA8 562 aa18.41■□□□□ 0.54
USP4-201ENST00000265560 SLC5A5Q92911 643 aa18.41■□□□□ 0.54
USP4-201ENST00000265560 BMP2KQ9NSY1 1161 aaPredicted RBP18.41■□□□□ 0.54
USP4-201ENST00000265560 GOLGA6L6A8MZA4 724 aa18.41■□□□□ 0.54
USP4-201ENST00000265560 SLITRK3O94933 977 aa18.41■□□□□ 0.54
USP4-201ENST00000265560 RPA1P27694 616 aa18.41■□□□□ 0.54
USP4-201ENST00000265560 WDR78Q5VTH9 848 aa18.41■□□□□ 0.54
USP4-201ENST00000265560 NCAPG2Q86XI2 1143 aa18.41■□□□□ 0.54
USP4-201ENST00000265560 DNAJC19Q96DA6 116 aa18.41■□□□□ 0.54
USP4-201ENST00000265560 ASCC2Q9H1I8 757 aaPredicted RBP18.41■□□□□ 0.54
USP4-201ENST00000265560 TMEM150BA6NC51 233 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 RSPH10B2B2RC85 870 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 RSPH10BP0C881 870 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 SH3D19Q5HYK7 790 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 HAUS3Q68CZ6 603 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 ERMNQ8TAM6 284 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 NT5C3AQ9H0P0 336 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 VPS16Q9H269 839 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 DNM3Q9UQ16 869 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 HS1BP3Q53T59 392 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 MAEAQ7L5Y9 396 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 FAM43AQ8N2R8 423 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 TXNRD2Q9NNW7 524 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 CYP39A1Q9NYL5 469 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 CYP2C8P10632 490 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 CYP11B2P19099 503 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 PPATQ06203 517 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 KCNB1Q14721 858 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 ANKRD35Q8N283 1001 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 TRIM47Q96LD4 638 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 SRRTQ9BXP5 876 aaKnown RBP18.4■□□□□ 0.54
USP4-201ENST00000265560 PANK4Q9NVE7 773 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 BRCA2P51587 3418 aa18.4■□□□□ 0.54
USP4-201ENST00000265560 RPTORQ8N122 1335 aa18.39■□□□□ 0.54
USP4-201ENST00000265560 KDM3AQ9Y4C1 1321 aa18.39■□□□□ 0.54
USP4-201ENST00000265560 SPDYE5A6NIY4 337 aa18.39■□□□□ 0.53
USP4-201ENST00000265560 PES1O00541 588 aaKnown RBP18.39■□□□□ 0.53
USP4-201ENST00000265560 NR3C2P08235 984 aa18.39■□□□□ 0.53
USP4-201ENST00000265560 ANKRD40Q6AI12 368 aa18.39■□□□□ 0.53
USP4-201ENST00000265560 SLC10A4Q96EP9 437 aa18.39■□□□□ 0.53
USP4-201ENST00000265560 NMRK2Q9NPI5 230 aa18.39■□□□□ 0.53
USP4-201ENST00000265560 RWDD2AQ9UIY3 292 aa18.39■□□□□ 0.53
USP4-201ENST00000265560 WDR90Q96KV7 1748 aa18.39■□□□□ 0.53
USP4-201ENST00000265560 SLC12A3P55017 1021 aa18.39■□□□□ 0.53
USP4-201ENST00000265560 Q3C1V9 767 aa18.39■□□□□ 0.53
USP4-201ENST00000265560 PCNX4Q63HM2 1172 aa18.39■□□□□ 0.53
USP4-201ENST00000265560 EEPD1Q7L9B9 569 aa18.39■□□□□ 0.53
USP4-201ENST00000265560 ARMC9Q7Z3E5 817 aa18.39■□□□□ 0.53
USP4-201ENST00000265560 NELFCDQ8IXH7 590 aa18.39■□□□□ 0.53
USP4-201ENST00000265560 HSD17B14Q9BPX1 270 aa18.39■□□□□ 0.53
USP4-201ENST00000265560 RUSC1Q9BVN2 902 aa18.39■□□□□ 0.53
USP4-201ENST00000265560 ACAD9Q9H845 621 aa18.39■□□□□ 0.53
USP4-201ENST00000265560 MAGEF1Q9HAY2 307 aa18.39■□□□□ 0.53
USP4-201ENST00000265560 TAB2Q9NYJ8 693 aa18.39■□□□□ 0.53
USP4-201ENST00000265560 A0A0G2JLL6 359 aaPredicted RBP18.38■□□□□ 0.53
USP4-201ENST00000265560 COASYQ13057 564 aa18.38■□□□□ 0.53
USP4-201ENST00000265560 HERC4Q5GLZ8 1057 aaPredicted RBP18.38■□□□□ 0.53
USP4-201ENST00000265560 UNC13DQ70J99 1090 aa18.38■□□□□ 0.53
USP4-201ENST00000265560 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.38■□□□□ 0.53
USP4-201ENST00000265560 PRRT2Q7Z6L0 340 aaPredicted RBP18.38■□□□□ 0.53
USP4-201ENST00000265560 PNMA8AQ86V59 439 aaPredicted RBP18.38■□□□□ 0.53
USP4-201ENST00000265560 DNAH12Q6ZR08 3092 aa18.38■□□□□ 0.53
USP4-201ENST00000265560 HYIQ5T013 277 aa18.38■□□□□ 0.53
USP4-201ENST00000265560 CCDC47Q96A33 483 aaKnown RBP18.38■□□□□ 0.53
USP4-201ENST00000265560 TEKT3Q9BXF9 490 aa18.38■□□□□ 0.53
USP4-201ENST00000265560 DOCK5Q9H7D0 1870 aa18.38■□□□□ 0.53
USP4-201ENST00000265560 PSMA7O14818 248 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms