RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 WDR24Q96S15 920 aa14.37□□□□□ -0.11
SPTLC1-201ENST00000262554 LZTFL1Q9NQ48 299 aa14.37□□□□□ -0.11
SPTLC1-201ENST00000262554 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.37□□□□□ -0.11
SPTLC1-201ENST00000262554 DNM3Q9UQ16 869 aa14.37□□□□□ -0.11
SPTLC1-201ENST00000262554 SLC12A3P55017 1021 aa14.36□□□□□ -0.11
SPTLC1-201ENST00000262554 NAA30Q147X3 362 aaPredicted RBP14.36□□□□□ -0.11
SPTLC1-201ENST00000262554 MAN2A1Q16706 1144 aa14.36□□□□□ -0.11
SPTLC1-201ENST00000262554 VWA3BQ502W6 1294 aa14.36□□□□□ -0.11
SPTLC1-201ENST00000262554 HERC4Q5GLZ8 1057 aaPredicted RBP14.36□□□□□ -0.11
SPTLC1-201ENST00000262554 FEZ1Q99689 392 aa14.36□□□□□ -0.11
SPTLC1-201ENST00000262554 KIF5CO60282 957 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 RPS12P25398 132 aaKnown RBP14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 RASA3Q14644 834 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 ARHGAP29Q52LW3 1261 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 FIGNQ5HY92 759 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 LRRC55Q6ZSA7 311 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 ZNF397Q8NF99 534 aaPredicted RBP14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 TTYH3Q9C0H2 523 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 ZNHIT6Q9NWK9 470 aaKnown RBP14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 CGNQ9P2M7 1197 aaKnown RBP14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 VAV3Q9UKW4 847 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 IGLV3-22A0A075B6J6 115 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 NPHP3-ACAD11A0A0J9YXS1 232 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 FRMD3A2A2Y4 597 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 FANCGO15287 622 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 SPATA31C1P0DKV0 1188 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 ZNF280AP59817 542 aaPredicted RBP14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 ZBED6P86452 979 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 FKBP3Q00688 224 aaKnown RBP14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 KIF4BQ2VIQ3 1234 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 KCTD17Q8N5Z5 321 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 SYT2Q8N9I0 419 aaPredicted RBP14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 GLIS3Q8NEA6 775 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 ACRBPQ8NEB7 543 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 MNS1Q8NEH6 495 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 CYP2W1Q8TAV3 490 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 POLR3CQ9BUI4 534 aaPredicted RBP14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 ZNF341Q9BYN7 854 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 GLIS2Q9BZE0 524 aaPredicted RBP14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 NDST4Q9H3R1 872 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 TBC1D7Q9P0N9 293 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 PCDHA2Q9Y5H9 948 aa14.35□□□□□ -0.11
SPTLC1-201ENST00000262554 A0A1W2PQJ5 194 aa14.34□□□□□ -0.11
SPTLC1-201ENST00000262554 SHTN1A0MZ66 631 aa14.34□□□□□ -0.11
SPTLC1-201ENST00000262554 ZCWPW2Q504Y3 356 aa14.34□□□□□ -0.11
SPTLC1-201ENST00000262554 ARSHQ5FYA8 562 aa14.34□□□□□ -0.11
SPTLC1-201ENST00000262554 CCDC84Q86UT8 332 aaPredicted RBP14.34□□□□□ -0.11
SPTLC1-201ENST00000262554 LDHDQ86WU2 507 aa14.34□□□□□ -0.11
SPTLC1-201ENST00000262554 TBC1D5Q92609 795 aa14.34□□□□□ -0.11
SPTLC1-201ENST00000262554 CEP63Q96MT8 703 aa14.34□□□□□ -0.11
SPTLC1-201ENST00000262554 CHP1Q99653 195 aa14.34□□□□□ -0.11
SPTLC1-201ENST00000262554 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.34□□□□□ -0.11
SPTLC1-201ENST00000262554 EPN1Q9Y6I3 576 aaPredicted RBP14.34□□□□□ -0.11
SPTLC1-201ENST00000262554 V9GYY5 206 aaPredicted RBP14.34□□□□□ -0.11
SPTLC1-201ENST00000262554 PHF20L1A8MW92 1017 aa14.33□□□□□ -0.11
SPTLC1-201ENST00000262554 TRAF5O00463 557 aa14.33□□□□□ -0.11
SPTLC1-201ENST00000262554 MEIS1O00470 390 aa14.33□□□□□ -0.11
SPTLC1-201ENST00000262554 NDUFA10O95299 355 aa14.33□□□□□ -0.11
SPTLC1-201ENST00000262554 PTGER2P43116 358 aa14.33□□□□□ -0.11
SPTLC1-201ENST00000262554 KLK7P49862 253 aa14.33□□□□□ -0.11
SPTLC1-201ENST00000262554 PSMC6P62333 389 aa14.33□□□□□ -0.11
SPTLC1-201ENST00000262554 RAD51AP2Q09MP3 1159 aa14.33□□□□□ -0.11
SPTLC1-201ENST00000262554 PABPC4Q13310 644 aaKnown RBP eCLIP14.33□□□□□ -0.11
SPTLC1-201ENST00000262554 MEA1Q16626 185 aa14.33□□□□□ -0.11
SPTLC1-201ENST00000262554 EIF2AK1Q9BQI3 630 aaKnown RBP14.33□□□□□ -0.11
SPTLC1-201ENST00000262554 SLF1Q9BQI6 1058 aa14.33□□□□□ -0.11
SPTLC1-201ENST00000262554 ZHX3Q9H4I2 956 aa14.33□□□□□ -0.11
SPTLC1-201ENST00000262554 EMILIN3Q9NT22 766 aa14.33□□□□□ -0.11
SPTLC1-201ENST00000262554 GINM1Q9NU53 330 aa14.33□□□□□ -0.11
SPTLC1-201ENST00000262554 AGPAT5Q9NUQ2 364 aa14.33□□□□□ -0.11
SPTLC1-201ENST00000262554 FBXO28Q9NVF7 368 aa14.33□□□□□ -0.11
SPTLC1-201ENST00000262554 COL4A3BPQ9Y5P4 624 aa14.33□□□□□ -0.11
SPTLC1-201ENST00000262554 RASSF10A6NK89 507 aa14.33□□□□□ -0.12
SPTLC1-201ENST00000262554 NFKBIEO00221 500 aa14.33□□□□□ -0.12
SPTLC1-201ENST00000262554 WDR46O15213 610 aaKnown RBP14.33□□□□□ -0.12
SPTLC1-201ENST00000262554 GNA14O95837 355 aa14.33□□□□□ -0.12
SPTLC1-201ENST00000262554 MAP3K9P80192 1104 aa14.33□□□□□ -0.12
SPTLC1-201ENST00000262554 GIT2Q14161 759 aa14.33□□□□□ -0.12
SPTLC1-201ENST00000262554 ELF2Q15723 593 aa14.33□□□□□ -0.12
SPTLC1-201ENST00000262554 CCDC40Q4G0X9 1142 aa14.33□□□□□ -0.12
SPTLC1-201ENST00000262554 LRCH2Q5VUJ6 765 aa14.33□□□□□ -0.12
SPTLC1-201ENST00000262554 LPAR1Q92633 364 aa14.33□□□□□ -0.12
SPTLC1-201ENST00000262554 WDR18Q9BV38 432 aa14.33□□□□□ -0.12
SPTLC1-201ENST00000262554 MTFR1LQ9H019 292 aa14.33□□□□□ -0.12
SPTLC1-201ENST00000262554 TUFT1Q9NNX1 390 aa14.33□□□□□ -0.12
SPTLC1-201ENST00000262554 MYO1AQ9UBC5 1043 aa14.33□□□□□ -0.12
SPTLC1-201ENST00000262554 PPP1R1BQ9UD71 204 aaPredicted RBP14.33□□□□□ -0.12
SPTLC1-201ENST00000262554 CCPG1Q9ULG6 757 aa14.33□□□□□ -0.12
SPTLC1-201ENST00000262554 RABGAP1Q9Y3P9 1069 aa14.33□□□□□ -0.12
SPTLC1-201ENST00000262554 EYA4O95677 639 aa14.32□□□□□ -0.12
SPTLC1-201ENST00000262554 ICAM1P05362 532 aa14.32□□□□□ -0.12
SPTLC1-201ENST00000262554 CYLC1P35663 651 aaPredicted RBP14.32□□□□□ -0.12
SPTLC1-201ENST00000262554 SETQ01105 290 aaPredicted RBP14.32□□□□□ -0.12
SPTLC1-201ENST00000262554 CYP4A11Q02928 519 aa14.32□□□□□ -0.12
SPTLC1-201ENST00000262554 PPP2R5CQ13362 524 aa14.32□□□□□ -0.12
SPTLC1-201ENST00000262554 CEP55Q53EZ4 464 aa14.32□□□□□ -0.12
SPTLC1-201ENST00000262554 ZNF569Q5MCW4 686 aa14.32□□□□□ -0.12
SPTLC1-201ENST00000262554 WDR59Q6PJI9 974 aa14.32□□□□□ -0.12
SPTLC1-201ENST00000262554 NELFCDQ8IXH7 590 aa14.32□□□□□ -0.12
SPTLC1-201ENST00000262554 PRPF38AQ8NAV1 312 aaKnown RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms