RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 TEPSINQ96N21 525 aa17.45■□□□□ 0.38
CLN3-251ENST00000636853 FEZ1Q99689 392 aa17.45■□□□□ 0.38
CLN3-251ENST00000636853 GJA3Q9Y6H8 435 aa17.45■□□□□ 0.38
CLN3-251ENST00000636853 ATAD5Q96QE3 1844 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 POTEFA5A3E0 1075 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 MSH4O15457 936 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 ZSCAN12O43309 604 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 PLA2G4BP0C869 781 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 POTEIP0CG38 1075 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 CIITAP33076 1130 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 GMPSP49915 693 aaPredicted RBP17.44■□□□□ 0.38
CLN3-251ENST00000636853 CENPPQ6IPU0 288 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 POTEGQ6S5H5 508 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 POTEEQ6S8J3 1075 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 CNOT6LQ96LI5 555 aaKnown RBP17.44■□□□□ 0.38
CLN3-251ENST00000636853 NPHP3-ACAD11A0A0J9YXS1 232 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 B4DLN1 442 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 TBX3O15119 743 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 TPM1P09493 284 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 PRELPP51888 382 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 UBXN2AP68543 259 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 EHHADHQ08426 723 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 TBC1D10BQ4KMP7 808 aaPredicted RBP17.44■□□□□ 0.38
CLN3-251ENST00000636853 FAM160B2Q86V87 743 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 CNGA4Q8IV77 575 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 MICALL2Q8IY33 904 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 ZNF507Q8TCN5 953 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 TUBGCP2Q9BSJ2 902 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 FEM1BQ9UK73 627 aa17.44■□□□□ 0.38
CLN3-251ENST00000636853 GCOM1H8Y6P7 765 aaPredicted RBP17.43■□□□□ 0.38
CLN3-251ENST00000636853 MEIS1O00470 390 aa17.43■□□□□ 0.38
CLN3-251ENST00000636853 NKRFO15226 690 aaKnown RBP eCLIP17.43■□□□□ 0.38
CLN3-251ENST00000636853 POLR2MP0CAP2 368 aa17.43■□□□□ 0.38
CLN3-251ENST00000636853 INPP5BP32019 993 aa17.43■□□□□ 0.38
CLN3-251ENST00000636853 CACNB1Q02641 598 aaPredicted RBP17.43■□□□□ 0.38
CLN3-251ENST00000636853 RAD51AP2Q09MP3 1159 aa17.43■□□□□ 0.38
CLN3-251ENST00000636853 COASYQ13057 564 aa17.43■□□□□ 0.38
CLN3-251ENST00000636853 TRAF1Q13077 416 aa17.43■□□□□ 0.38
CLN3-251ENST00000636853 DGKZQ13574 1117 aa17.43■□□□□ 0.38
CLN3-251ENST00000636853 RAD9BQ6WBX8 426 aa17.43■□□□□ 0.38
CLN3-251ENST00000636853 CATSPER3Q86XQ3 398 aa17.43■□□□□ 0.38
CLN3-251ENST00000636853 ZNF710Q8N1W2 664 aa17.43■□□□□ 0.38
CLN3-251ENST00000636853 PANK4Q9NVE7 773 aa17.43■□□□□ 0.38
CLN3-251ENST00000636853 CYP3A4P08684 503 aa17.42■□□□□ 0.38
CLN3-251ENST00000636853 TRIM65Q6PJ69 517 aa17.42■□□□□ 0.38
CLN3-251ENST00000636853 SLC30A10Q6XR72 485 aa17.42■□□□□ 0.38
CLN3-251ENST00000636853 GPBP1Q86WP2 473 aa17.42■□□□□ 0.38
CLN3-251ENST00000636853 GUF1Q8N442 669 aaKnown RBP17.42■□□□□ 0.38
CLN3-251ENST00000636853 ZFP91Q96JP5 570 aaPredicted RBP17.42■□□□□ 0.38
CLN3-251ENST00000636853 FAM20AQ96MK3 541 aa17.42■□□□□ 0.38
CLN3-251ENST00000636853 TBC1D7Q9P0N9 293 aa17.42■□□□□ 0.38
CLN3-251ENST00000636853 CTIFO43310 598 aaKnown RBP17.42■□□□□ 0.38
CLN3-251ENST00000636853 PLA2G6O60733 806 aa17.42■□□□□ 0.38
CLN3-251ENST00000636853 ZSCAN20P17040 1043 aaPredicted RBP17.42■□□□□ 0.38
CLN3-251ENST00000636853 RPS12P25398 132 aaKnown RBP17.42■□□□□ 0.38
CLN3-251ENST00000636853 MTIF2P46199 727 aaKnown RBP17.42■□□□□ 0.38
CLN3-251ENST00000636853 ETF1P62495 437 aaKnown RBP17.42■□□□□ 0.38
CLN3-251ENST00000636853 HAUS3Q68CZ6 603 aa17.42■□□□□ 0.38
CLN3-251ENST00000636853 LDHDQ86WU2 507 aa17.42■□□□□ 0.38
CLN3-251ENST00000636853 BMP2KQ9NSY1 1161 aaPredicted RBP17.42■□□□□ 0.38
CLN3-251ENST00000636853 ABHD10Q9NUJ1 306 aa17.42■□□□□ 0.38
CLN3-251ENST00000636853 DNAI1Q9UI46 699 aa17.42■□□□□ 0.38
CLN3-251ENST00000636853 CNOT7Q9UIV1 285 aaKnown RBP17.42■□□□□ 0.38
CLN3-251ENST00000636853 MRPL11Q9Y3B7 192 aaKnown RBP17.42■□□□□ 0.38
CLN3-251ENST00000636853 IGLV3-22A0A075B6J6 115 aa17.41■□□□□ 0.38
CLN3-251ENST00000636853 SPATA31C1P0DKV0 1188 aa17.41■□□□□ 0.38
CLN3-251ENST00000636853 CYP11B2P19099 503 aa17.41■□□□□ 0.38
CLN3-251ENST00000636853 PSMC6P62333 389 aa17.41■□□□□ 0.38
CLN3-251ENST00000636853 PSMD2Q13200 908 aa17.41■□□□□ 0.38
CLN3-251ENST00000636853 TNFAIP1Q13829 316 aa17.41■□□□□ 0.38
CLN3-251ENST00000636853 FAM114A1Q8IWE2 563 aa17.41■□□□□ 0.38
CLN3-251ENST00000636853 WDR18Q9BV38 432 aa17.41■□□□□ 0.38
CLN3-251ENST00000636853 NAA15Q9BXJ9 866 aaKnown RBP17.41■□□□□ 0.38
CLN3-251ENST00000636853 FGFBP2Q9BYJ0 223 aa17.41■□□□□ 0.38
CLN3-251ENST00000636853 VAV3Q9UKW4 847 aa17.41■□□□□ 0.38
CLN3-251ENST00000636853 KRT9P35527 623 aa17.41■□□□□ 0.38
CLN3-251ENST00000636853 SLC12A3P55017 1021 aa17.41■□□□□ 0.38
CLN3-251ENST00000636853 CCDC125Q86Z20 511 aa17.41■□□□□ 0.38
CLN3-251ENST00000636853 ERMNQ8TAM6 284 aa17.41■□□□□ 0.38
CLN3-251ENST00000636853 CCDC51Q96ER9 411 aa17.41■□□□□ 0.38
CLN3-251ENST00000636853 AGBL1Q96MI9 1066 aa17.41■□□□□ 0.38
CLN3-251ENST00000636853 HACL1Q9UJ83 578 aa17.41■□□□□ 0.38
CLN3-251ENST00000636853 RPA1P27694 616 aa17.4■□□□□ 0.38
CLN3-251ENST00000636853 PTGER2P43116 358 aa17.4■□□□□ 0.38
CLN3-251ENST00000636853 DNM2P50570 870 aa17.4■□□□□ 0.38
CLN3-251ENST00000636853 CYP4A11Q02928 519 aa17.4■□□□□ 0.38
CLN3-251ENST00000636853 TRIM14Q14142 442 aa17.4■□□□□ 0.38
CLN3-251ENST00000636853 ARSHQ5FYA8 562 aa17.4■□□□□ 0.38
CLN3-251ENST00000636853 FAM26FQ5R3K3 315 aa17.4■□□□□ 0.38
CLN3-251ENST00000636853 NOC4LQ9BVI4 516 aaKnown RBP17.4■□□□□ 0.38
CLN3-251ENST00000636853 A0A1W2PQC6 194 aa17.4■□□□□ 0.38
CLN3-251ENST00000636853 TTC26A0AVF1 554 aa17.4■□□□□ 0.38
CLN3-251ENST00000636853 EML1O00423 815 aa17.4■□□□□ 0.38
CLN3-251ENST00000636853 FANCGO15287 622 aa17.4■□□□□ 0.38
CLN3-251ENST00000636853 SLC26A4O43511 780 aa17.4■□□□□ 0.38
CLN3-251ENST00000636853 KLK7P49862 253 aa17.4■□□□□ 0.38
CLN3-251ENST00000636853 PABPC4Q13310 644 aaKnown RBP eCLIP17.4■□□□□ 0.38
CLN3-251ENST00000636853 MIIPQ5JXC2 388 aa17.4■□□□□ 0.38
CLN3-251ENST00000636853 MYOCDQ8IZQ8 938 aa17.4■□□□□ 0.38
CLN3-251ENST00000636853 MRPL44Q9H9J2 332 aaKnown RBP17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms