RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 PNMA6FA0A0J9YX94 578 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 A0A1B0GTH6 734 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 CTAGE15A4D2H0 777 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 CTAGE8P0CG41 777 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 CTAGE6Q86UF2 777 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 CTAGE4Q8IX94 777 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 FBXO28Q9NVF7 368 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 GEMIN8Q9NWZ8 242 aaKnown RBP16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 TTC26A0AVF1 554 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 CTAGE9A4FU28 777 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 CORO7P57737 925 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 MRPS25P82663 173 aaKnown RBP16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 DNAJC21Q5F1R6 531 aaKnown RBP16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 CAPZA3Q96KX2 299 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 NLRC4Q9NPP4 1024 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 SH3GLB2Q9NR46 395 aa16.05■□□□□ 0.16
SHROOM1-208ENST00000617339 SNED1Q8TER0 1413 aa16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 DPEP1P16444 411 aa16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 NAP1L1P55209 391 aaKnown RBP16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 RRP1BQ14684 758 aaKnown RBP16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 FKBP15Q5T1M5 1219 aa16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 SMCR8Q8TEV9 937 aaPredicted RBP16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 NCAPGQ9BPX3 1015 aa16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 TUBGCP2Q9BSJ2 902 aa16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 POTEFA5A3E0 1075 aa16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 ZBTB5O15062 677 aa16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 POTEIP0CG38 1075 aa16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 CCT5P48643 541 aa16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 HERC4Q5GLZ8 1057 aaPredicted RBP16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 POTEGQ6S5H5 508 aa16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 POTEEQ6S8J3 1075 aa16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 SPATA20Q8TB22 786 aa16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 AFAP1L1Q8TED9 768 aa16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 DDX12PQ92771 950 aa16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 MACROD2A1Z1Q3 448 aa16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 TRAF5O00463 557 aa16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 ASPRV1Q53RT3 343 aa16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 LARP4BQ92615 738 aaKnown RBP16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 MMTAG2Q9BU76 263 aaKnown RBP16.04■□□□□ 0.16
SHROOM1-208ENST00000617339 CNOT6LQ96LI5 555 aaKnown RBP16.03■□□□□ 0.16
SHROOM1-208ENST00000617339 CTAGE1Q96RT6 745 aa16.03■□□□□ 0.16
SHROOM1-208ENST00000617339 GLIS2Q9BZE0 524 aaPredicted RBP16.03■□□□□ 0.16
SHROOM1-208ENST00000617339 ZNF408Q9H9D4 720 aa16.03■□□□□ 0.16
SHROOM1-208ENST00000617339 LUC7L2Q9Y383 392 aaKnown RBP16.03■□□□□ 0.16
SHROOM1-208ENST00000617339 NID2Q14112 1375 aa16.03■□□□□ 0.16
SHROOM1-208ENST00000617339 SPDYE3A6NKU9 549 aa16.03■□□□□ 0.16
SHROOM1-208ENST00000617339 NDUFB10O96000 172 aa16.03■□□□□ 0.16
SHROOM1-208ENST00000617339 GABPAQ06546 454 aa16.03■□□□□ 0.16
SHROOM1-208ENST00000617339 DACT2Q5SW24 774 aa16.03■□□□□ 0.16
SHROOM1-208ENST00000617339 TMED8Q6PL24 325 aaPredicted RBP16.03■□□□□ 0.16
SHROOM1-208ENST00000617339 TEX2Q8IWB9 1127 aa16.03■□□□□ 0.16
SHROOM1-208ENST00000617339 PIGOQ8TEQ8 1089 aa16.03■□□□□ 0.16
SHROOM1-208ENST00000617339 FAM163AQ96GL9 167 aaPredicted RBP16.03■□□□□ 0.16
SHROOM1-208ENST00000617339 EHD4Q9H223 541 aa16.03■□□□□ 0.16
SHROOM1-208ENST00000617339 RIOX1Q9H6W3 641 aa16.03■□□□□ 0.16
SHROOM1-208ENST00000617339 YY1AP1Q9H869 796 aa16.03■□□□□ 0.16
SHROOM1-208ENST00000617339 RWDD2AQ9UIY3 292 aa16.03■□□□□ 0.16
SHROOM1-208ENST00000617339 SAMM50Q9Y512 469 aa16.03■□□□□ 0.16
SHROOM1-208ENST00000617339 A0A1W2PRG0 241 aa16.02■□□□□ 0.16
SHROOM1-208ENST00000617339 ZBTB39O15060 712 aa16.02■□□□□ 0.16
SHROOM1-208ENST00000617339 PPARDQ03181 441 aa16.02■□□□□ 0.16
SHROOM1-208ENST00000617339 GRB10Q13322 594 aa16.02■□□□□ 0.16
SHROOM1-208ENST00000617339 FBXW10Q5XX13 1052 aa16.02■□□□□ 0.16
SHROOM1-208ENST00000617339 ADSSL1Q8N142 457 aa16.02■□□□□ 0.16
SHROOM1-208ENST00000617339 FAM71BQ8TC56 605 aa16.02■□□□□ 0.16
SHROOM1-208ENST00000617339 ANKS1AQ92625 1134 aa16.02■□□□□ 0.16
SHROOM1-208ENST00000617339 ADGRG1Q9Y653 693 aa16.02■□□□□ 0.16
SHROOM1-208ENST00000617339 YDJCA8MPS7 323 aa16.02■□□□□ 0.16
SHROOM1-208ENST00000617339 M0R2N6 131 aa16.02■□□□□ 0.16
SHROOM1-208ENST00000617339 FAM83BQ5T0W9 1011 aa16.02■□□□□ 0.16
SHROOM1-208ENST00000617339 KRT26Q7Z3Y9 468 aa16.02■□□□□ 0.16
SHROOM1-208ENST00000617339 IRF2BP1Q8IU81 584 aa16.02■□□□□ 0.16
SHROOM1-208ENST00000617339 IKZF4Q9H2S9 585 aa16.02■□□□□ 0.16
SHROOM1-208ENST00000617339 APTXQ7Z2E3 356 aaKnown RBP16.02■□□□□ 0.15
SHROOM1-208ENST00000617339 KIAA1328Q86T90 577 aa16.02■□□□□ 0.15
SHROOM1-208ENST00000617339 AKT1S1Q96B36 256 aa16.02■□□□□ 0.15
SHROOM1-208ENST00000617339 FGFBP2Q9BYJ0 223 aa16.02■□□□□ 0.15
SHROOM1-208ENST00000617339 ACBD3Q9H3P7 528 aa16.02■□□□□ 0.15
SHROOM1-208ENST00000617339 RGL1Q9NZL6 768 aa16.02■□□□□ 0.15
SHROOM1-208ENST00000617339 PSMD14O00487 310 aa16.01■□□□□ 0.15
SHROOM1-208ENST00000617339 MFAP3LO75121 409 aa16.01■□□□□ 0.15
SHROOM1-208ENST00000617339 TCERG1LQ5VWI1 586 aa16.01■□□□□ 0.15
SHROOM1-208ENST00000617339 TADA2BQ86TJ2 420 aa16.01■□□□□ 0.15
SHROOM1-208ENST00000617339 PSMC6P62333 389 aa16.01■□□□□ 0.15
SHROOM1-208ENST00000617339 AMPD3Q01432 767 aa16.01■□□□□ 0.15
SHROOM1-208ENST00000617339 TBX2Q13207 712 aaPredicted RBP16.01■□□□□ 0.15
SHROOM1-208ENST00000617339 CCDC40Q4G0X9 1142 aa16.01■□□□□ 0.15
SHROOM1-208ENST00000617339 DNAAF5Q86Y56 855 aa16.01■□□□□ 0.15
SHROOM1-208ENST00000617339 KLRC4O43908 158 aa16.01■□□□□ 0.15
SHROOM1-208ENST00000617339 PLEKP08567 350 aaPredicted RBP16.01■□□□□ 0.15
SHROOM1-208ENST00000617339 ERVK-24P63145 666 aa16.01■□□□□ 0.15
SHROOM1-208ENST00000617339 RAB34Q9BZG1 259 aa16.01■□□□□ 0.15
SHROOM1-208ENST00000617339 HDAC6Q9UBN7 1215 aa16.01■□□□□ 0.15
SHROOM1-208ENST00000617339 DUSP10Q9Y6W6 482 aa16.01■□□□□ 0.15
SHROOM1-208ENST00000617339 POTEB2H3BUK9 544 aa16■□□□□ 0.15
SHROOM1-208ENST00000617339 SRGAP2O75044 1071 aa16■□□□□ 0.15
SHROOM1-208ENST00000617339 MATR3P43243 847 aaKnown RBP eCLIP16■□□□□ 0.15
SHROOM1-208ENST00000617339 CDKAL1Q5VV42 579 aa16■□□□□ 0.15
SHROOM1-208ENST00000617339 P2RX5Q93086 422 aa16■□□□□ 0.15
SHROOM1-208ENST00000617339 PNMA5Q96PV4 448 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 158.3 ms