RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 GNPATO15228 680 aa13.83□□□□□ -0.2
LIG1-221ENST00000613670 NAA25Q14CX7 972 aa13.83□□□□□ -0.2
LIG1-221ENST00000613670 UNC13DQ70J99 1090 aa13.83□□□□□ -0.2
LIG1-221ENST00000613670 ERMNQ8TAM6 284 aa13.83□□□□□ -0.2
LIG1-221ENST00000613670 MGARPQ8TDB4 240 aa13.83□□□□□ -0.2
LIG1-221ENST00000613670 PAIP2Q9BPZ3 127 aaKnown RBP13.83□□□□□ -0.2
LIG1-221ENST00000613670 LTN1O94822 1766 aa13.83□□□□□ -0.2
LIG1-221ENST00000613670 PLEKHG2Q9H7P9 1386 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 NALCNQ8IZF0 1738 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 MYMKA6NI61 221 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 MEIS1O00470 390 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 CHMP2AO43633 222 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 SERPING1P05155 500 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 H2AFZP0C0S5 128 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 DHX9Q08211 1270 aaKnown RBP13.82□□□□□ -0.2
LIG1-221ENST00000613670 H2AFVQ71UI9 128 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 DNAAF5Q86Y56 855 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 DUSP9Q99956 384 aaKnown RBP13.82□□□□□ -0.2
LIG1-221ENST00000613670 TNS3Q68CZ2 1445 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 LRRC37A3O60309 1634 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 GCNT3O95395 438 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 XRCC5P13010 732 aaKnown RBP13.82□□□□□ -0.2
LIG1-221ENST00000613670 BTDP43251 543 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 SLC20A2Q08357 652 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 PABPC4Q13310 644 aaKnown RBP eCLIP13.82□□□□□ -0.22e-6■■■■□ 26.1
LIG1-221ENST00000613670 PPP1R7Q15435 360 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 RNPC3Q96LT9 517 aaKnown RBP13.82□□□□□ -0.2
LIG1-221ENST00000613670 KCNK9Q9NPC2 374 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 PLAGL2Q9UPG8 496 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 ARHGAP23Q9P227 1491 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 ORC4O43929 436 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 UFL1O94874 794 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 TSEN2Q8NCE0 465 aaKnown RBP13.82□□□□□ -0.2
LIG1-221ENST00000613670 TBC1D31Q96DN5 1066 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 UBXN6Q9BZV1 441 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 SAMD15Q9P1V8 674 aa13.82□□□□□ -0.2
LIG1-221ENST00000613670 BUB1BO60566 1050 aaPredicted RBP13.81□□□□□ -0.2
LIG1-221ENST00000613670 EPB41P11171 864 aaKnown RBP13.81□□□□□ -0.2
LIG1-221ENST00000613670 GKAP1Q5VSY0 366 aaPredicted RBP13.81□□□□□ -0.2
LIG1-221ENST00000613670 KSR1Q8IVT5 923 aa13.81□□□□□ -0.2
LIG1-221ENST00000613670 MMGT1Q8N4V1 131 aa13.81□□□□□ -0.2
LIG1-221ENST00000613670 BSDC1Q9NW68 430 aaPredicted RBP13.81□□□□□ -0.2
LIG1-221ENST00000613670 CLIC2O15247 247 aa13.81□□□□□ -0.2
LIG1-221ENST00000613670 KLRC1P26715 233 aa13.81□□□□□ -0.2
LIG1-221ENST00000613670 RFC4P35249 363 aa13.81□□□□□ -0.2
LIG1-221ENST00000613670 EXOC3L4Q17RC7 722 aa13.81□□□□□ -0.2
LIG1-221ENST00000613670 E9PMD0 336 aa13.81□□□□□ -0.2
LIG1-221ENST00000613670 FAM13AO94988 1023 aa13.81□□□□□ -0.2
LIG1-221ENST00000613670 RPSAP08865 295 aaKnown RBP13.81□□□□□ -0.2
LIG1-221ENST00000613670 LSP1P33241 339 aa13.81□□□□□ -0.2
LIG1-221ENST00000613670 LRRC63Q05C16 580 aa13.81□□□□□ -0.2
LIG1-221ENST00000613670 PDXDC1Q6P996 788 aa13.81□□□□□ -0.2
LIG1-221ENST00000613670 MAEAQ7L5Y9 396 aa13.81□□□□□ -0.2
LIG1-221ENST00000613670 TAOK3Q9H2K8 898 aa13.81□□□□□ -0.2
LIG1-221ENST00000613670 SH3GLB2Q9NR46 395 aa13.81□□□□□ -0.2
LIG1-221ENST00000613670 KBTBD4Q9NVX7 518 aa13.81□□□□□ -0.2
LIG1-221ENST00000613670 STK17AQ9UEE5 414 aa13.81□□□□□ -0.2
LIG1-221ENST00000613670 ANAPC4Q9UJX5 808 aa13.81□□□□□ -0.2
LIG1-221ENST00000613670 USP17L5A8MUK1 530 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 ADAMTS3O15072 1205 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 EPHB6O15197 1021 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 PPP1R37O75864 691 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 KIF4AO95239 1232 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 GLI1P08151 1106 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 TNFAIP3P21580 790 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 HNRNPH1P31943 449 aaKnown RBP13.8□□□□□ -0.2
LIG1-221ENST00000613670 NKX1-1Q15270 411 aaPredicted RBP13.8□□□□□ -0.2
LIG1-221ENST00000613670 ALKBH5Q6P6C2 394 aaKnown RBP13.8□□□□□ -0.2
LIG1-221ENST00000613670 NLRP14Q86W24 1093 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 CREG2Q8IUH2 290 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 SLF2Q8IX21 1173 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 MTMR8Q96EF0 704 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 NYXQ9GZU5 481 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 RIC8AQ9NPQ8 531 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 CLTAP09496 248 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 RPL13P26373 211 aaKnown RBP13.8□□□□□ -0.2
LIG1-221ENST00000613670 SLCO1A2P46721 670 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 GRM4Q14833 912 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 USH1GQ495M9 461 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 TMED8Q6PL24 325 aaPredicted RBP13.8□□□□□ -0.2
LIG1-221ENST00000613670 DPP8Q6V1X1 898 aaPredicted RBP13.8□□□□□ -0.2
LIG1-221ENST00000613670 WHAMMQ8TF30 809 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 CCT8L2Q96SF2 557 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 SEMA6BQ9H3T3 888 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 PSTPIP2Q9H939 334 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 EMILIN3Q9NT22 766 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 AMFRQ9UKV5 643 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 PGRMC1O00264 195 aaKnown RBP13.8□□□□□ -0.2
LIG1-221ENST00000613670 NEFHP12036 1026 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 AARSP49588 968 aaKnown RBP eCLIP13.8□□□□□ -0.22e-6■■■■□ 24
LIG1-221ENST00000613670 PRR16Q569H4 304 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 NAALADL2Q58DX5 795 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 HAUS3Q68CZ6 603 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 ERGIC2Q96RQ1 377 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 RNF14Q9UBS8 474 aa13.8□□□□□ -0.2
LIG1-221ENST00000613670 SPDYE3A6NKU9 549 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 MEFVO15553 781 aaPredicted RBP13.79□□□□□ -0.2
LIG1-221ENST00000613670 CTNND1O60716 968 aaKnown RBP13.79□□□□□ -0.2
LIG1-221ENST00000613670 FAM153BP0C7A2 387 aa13.79□□□□□ -0.2
LIG1-221ENST00000613670 TMOD1P28289 359 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms