RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 PCDHA2Q9Y5H9 948 aa7.75□□□□□ -1.17
SMCHD1-202ENST00000577300 TADA3O75528 432 aa7.74□□□□□ -1.17
SMCHD1-202ENST00000577300 ITGB3P05106 788 aa7.74□□□□□ -1.17
SMCHD1-202ENST00000577300 STAT5AP42229 794 aa7.74□□□□□ -1.17
SMCHD1-202ENST00000577300 NKX3-2P78367 333 aa7.74□□□□□ -1.17
SMCHD1-202ENST00000577300 KIAA2012Q0VF49 1180 aa7.74□□□□□ -1.17
SMCHD1-202ENST00000577300 MAP4K2Q12851 820 aa7.74□□□□□ -1.17
SMCHD1-202ENST00000577300 RGL3Q3MIN7 710 aa7.74□□□□□ -1.17
SMCHD1-202ENST00000577300 RBM15Q96T37 977 aaKnown RBP eCLIP7.74□□□□□ -1.17
SMCHD1-202ENST00000577300 PPP2R2AP63151 447 aa7.73□□□□□ -1.17
SMCHD1-202ENST00000577300 ADAM9Q13443 819 aa7.73□□□□□ -1.17
SMCHD1-202ENST00000577300 STEAP3Q658P3 488 aa7.73□□□□□ -1.17
SMCHD1-202ENST00000577300 HHIPL2Q6UWX4 724 aa7.73□□□□□ -1.17
SMCHD1-202ENST00000577300 STK32CQ86UX6 486 aa7.73□□□□□ -1.17
SMCHD1-202ENST00000577300 KCTD13Q8WZ19 329 aa7.73□□□□□ -1.17
SMCHD1-202ENST00000577300 CHAMP1Q96JM3 812 aa7.73□□□□□ -1.17
SMCHD1-202ENST00000577300 YIPF4Q9BSR8 244 aa7.73□□□□□ -1.17
SMCHD1-202ENST00000577300 EPB41L1Q9H4G0 881 aa7.73□□□□□ -1.17
SMCHD1-202ENST00000577300 CLDND1Q9NY35 253 aa7.73□□□□□ -1.17
SMCHD1-202ENST00000577300 DTLQ9NZJ0 730 aa7.73□□□□□ -1.17
SMCHD1-202ENST00000577300 PCDHB4Q9Y5E5 795 aa7.73□□□□□ -1.17
SMCHD1-202ENST00000577300 TCRBV5S2A0A599 114 aa7.72□□□□□ -1.17
SMCHD1-202ENST00000577300 GGNQ86UU5 652 aa7.72□□□□□ -1.17
SMCHD1-202ENST00000577300 ARRDC4Q8NCT1 418 aa7.72□□□□□ -1.17
SMCHD1-202ENST00000577300 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.72□□□□□ -1.17
SMCHD1-202ENST00000577300 TOE1Q96GM8 510 aaKnown RBP7.72□□□□□ -1.17
SMCHD1-202ENST00000577300 R3HCC1Q9Y3T6 440 aaKnown RBP7.72□□□□□ -1.17
SMCHD1-202ENST00000577300 A0A1W2PQU0 124 aa7.71□□□□□ -1.18
SMCHD1-202ENST00000577300 MROH6A6NGR9 719 aa7.71□□□□□ -1.18
SMCHD1-202ENST00000577300 DGKIO75912 1065 aa7.71□□□□□ -1.18
SMCHD1-202ENST00000577300 GRIA2P42262 883 aa7.71□□□□□ -1.18
SMCHD1-202ENST00000577300 ZNF827Q17R98 1081 aa7.71□□□□□ -1.18
SMCHD1-202ENST00000577300 FAM124AQ86V42 546 aa7.71□□□□□ -1.18
SMCHD1-202ENST00000577300 LGI4Q8N135 537 aa7.71□□□□□ -1.18
SMCHD1-202ENST00000577300 SLC43A3Q8NBI5 491 aa7.71□□□□□ -1.18
SMCHD1-202ENST00000577300 TXNDC5Q8NBS9 432 aaKnown RBP7.71□□□□□ -1.18
SMCHD1-202ENST00000577300 PHOSPHO1Q8TCT1 267 aa7.71□□□□□ -1.18
SMCHD1-202ENST00000577300 GMLQ99445 158 aa7.71□□□□□ -1.18
SMCHD1-202ENST00000577300 CDIP1Q9H305 208 aa7.71□□□□□ -1.18
SMCHD1-202ENST00000577300 GPR27Q9NS67 375 aa7.71□□□□□ -1.18
SMCHD1-202ENST00000577300 CCDC9Q9Y3X0 531 aaKnown RBP7.71□□□□□ -1.18
SMCHD1-202ENST00000577300 C9orf118A6NHY6 69 aa7.7□□□□□ -1.18
SMCHD1-202ENST00000577300 DDX3XO00571 662 aaKnown RBP eCLIP7.7□□□□□ -1.18
SMCHD1-202ENST00000577300 PLATP00750 562 aa7.7□□□□□ -1.18
SMCHD1-202ENST00000577300 ZNF28P17035 718 aa7.7□□□□□ -1.18
SMCHD1-202ENST00000577300 DNAJA1P31689 397 aaKnown RBP7.7□□□□□ -1.18
SMCHD1-202ENST00000577300 MAGEA10P43363 369 aaPredicted RBP7.7□□□□□ -1.18
SMCHD1-202ENST00000577300 MCTP2Q6DN12 878 aa7.7□□□□□ -1.18
SMCHD1-202ENST00000577300 CYP4F22Q6NT55 531 aa7.7□□□□□ -1.18
SMCHD1-202ENST00000577300 BORAQ6PGQ7 559 aa7.7□□□□□ -1.18
SMCHD1-202ENST00000577300 TEPPQ6URK8 271 aa7.7□□□□□ -1.18
SMCHD1-202ENST00000577300 HNRNPLLQ8WVV9 542 aaKnown RBP7.7□□□□□ -1.18
SMCHD1-202ENST00000577300 SGSM3Q96HU1 749 aa7.7□□□□□ -1.18
SMCHD1-202ENST00000577300 SMOC1Q9H4F8 434 aa7.7□□□□□ -1.18
SMCHD1-202ENST00000577300 MAFKO60675 156 aa7.69□□□□□ -1.18
SMCHD1-202ENST00000577300 DDR2Q16832 855 aa7.69□□□□□ -1.18
SMCHD1-202ENST00000577300 ZXDCQ2QGD7 858 aaPredicted RBP7.69□□□□□ -1.18
SMCHD1-202ENST00000577300 TBC1D10BQ4KMP7 808 aaPredicted RBP7.69□□□□□ -1.18
SMCHD1-202ENST00000577300 RSPO2Q6UXX9 243 aaPredicted RBP7.69□□□□□ -1.18
SMCHD1-202ENST00000577300 CELF2-AS1Q8N7Q2 184 aa7.69□□□□□ -1.18
SMCHD1-202ENST00000577300 LCORQ96JN0 433 aaPredicted RBP7.69□□□□□ -1.18
SMCHD1-202ENST00000577300 IER2Q9BTL4 223 aa7.69□□□□□ -1.18
SMCHD1-202ENST00000577300 HSPBP1Q9NZL4 362 aa7.69□□□□□ -1.18
SMCHD1-202ENST00000577300 MYOTQ9UBF9 498 aa7.69□□□□□ -1.18
SMCHD1-202ENST00000577300 INVSQ9Y283 1065 aa7.69□□□□□ -1.18
SMCHD1-202ENST00000577300 DLX3O60479 287 aa7.68□□□□□ -1.18
SMCHD1-202ENST00000577300 CYP7B1O75881 506 aa7.68□□□□□ -1.18
SMCHD1-202ENST00000577300 LRG1P02750 347 aa7.68□□□□□ -1.18
SMCHD1-202ENST00000577300 HSP90AA2PQ14568 343 aaPredicted RBP7.68□□□□□ -1.18
SMCHD1-202ENST00000577300 ANKS3Q6ZW76 656 aa7.68□□□□□ -1.18
SMCHD1-202ENST00000577300 WRNIP1Q96S55 665 aa7.68□□□□□ -1.18
SMCHD1-202ENST00000577300 ST7Q9NRC1 585 aa7.68□□□□□ -1.18
SMCHD1-202ENST00000577300 KRIT1O00522 736 aa7.67□□□□□ -1.18
SMCHD1-202ENST00000577300 KLF4O43474 513 aa7.67□□□□□ -1.18
SMCHD1-202ENST00000577300 PRAMEF18Q5VWM3 479 aa7.67□□□□□ -1.18
SMCHD1-202ENST00000577300 TTC9BQ8N6N2 239 aa7.67□□□□□ -1.18
SMCHD1-202ENST00000577300 SAMD11Q96NU1 681 aa7.67□□□□□ -1.18
SMCHD1-202ENST00000577300 CLIC6Q96NY7 704 aa7.67□□□□□ -1.18
SMCHD1-202ENST00000577300 TMEM209Q96SK2 561 aa7.67□□□□□ -1.18
SMCHD1-202ENST00000577300 SLC6A20Q9NP91 592 aa7.67□□□□□ -1.18
SMCHD1-202ENST00000577300 SMPD4Q9NXE4 827 aa7.67□□□□□ -1.18
SMCHD1-202ENST00000577300 ASH2LQ9UBL3 628 aa7.67□□□□□ -1.18
SMCHD1-202ENST00000577300 MYRFQ9Y2G1 1151 aa7.67□□□□□ -1.18
SMCHD1-202ENST00000577300 IQCA1LA6NCM1 817 aa7.66□□□□□ -1.18
SMCHD1-202ENST00000577300 IL13P35225 146 aa7.66□□□□□ -1.18
SMCHD1-202ENST00000577300 ADAM17P78536 824 aa7.66□□□□□ -1.18
SMCHD1-202ENST00000577300 TTLL11Q8NHH1 800 aa7.66□□□□□ -1.18
SMCHD1-202ENST00000577300 YTHDC1Q96MU7 727 aaKnown RBP7.66□□□□□ -1.18
SMCHD1-202ENST00000577300 AARSD1Q9BTE6 412 aaKnown RBP7.66□□□□□ -1.18
SMCHD1-202ENST00000577300 MSCO60682 206 aa7.65□□□□□ -1.18
SMCHD1-202ENST00000577300 FGFR1P11362 822 aa7.65□□□□□ -1.18
SMCHD1-202ENST00000577300 SURF1Q15526 300 aa7.65□□□□□ -1.18
SMCHD1-202ENST00000577300 USP53Q70EK8 1073 aa7.65□□□□□ -1.18
SMCHD1-202ENST00000577300 TRIM48Q8IWZ4 208 aa7.65□□□□□ -1.18
SMCHD1-202ENST00000577300 DCAF4Q8WV16 495 aa7.65□□□□□ -1.18
SMCHD1-202ENST00000577300 ZSWIM3Q96MP5 696 aa7.65□□□□□ -1.18
SMCHD1-202ENST00000577300 GPR20Q99678 358 aa7.65□□□□□ -1.18
SMCHD1-202ENST00000577300 PHF20Q9BVI0 1012 aa7.65□□□□□ -1.18
SMCHD1-202ENST00000577300 SSBP3Q9BWW4 388 aaPredicted RBP7.65□□□□□ -1.18
SMCHD1-202ENST00000577300 L2HGDHQ9H9P8 463 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms