RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 PCDHGA6Q9Y5G7 932 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 PCDHGA3Q9Y5H0 932 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 PCDHGA2Q9Y5H1 932 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 ABCC3O15438 1527 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 GCC2Q8IWJ2 1684 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 TONSLQ96HA7 1378 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 UGGT1Q9NYU2 1555 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 A0A1B0GVC2 190 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 BLACEA4D250 179 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 ADARB2-AS1A8MUL3 147 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 K7ESF4 209 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 SCP2P22307 547 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 IGFALSP35858 605 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 STT3AP46977 705 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 TM4SF4P48230 202 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 APBA1Q02410 837 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 KLF1Q13351 362 aaPredicted RBP6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 LRRFIP1Q32MZ4 808 aaKnown RBP6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 NBPF8Q3BBV2 869 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 PIK3R6Q5UE93 754 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 OVOS1Q6IE37 1185 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 NSMFQ6X4W1 530 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 SYDE1Q6ZW31 735 aaPredicted RBP6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 FAM43AQ8N2R8 423 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 FAM26EQ8N5C1 309 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 TAB3Q8N5C8 712 aaPredicted RBP6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 MYCT1Q8N699 235 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 PPM1MQ96MI6 270 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 TBCBQ99426 244 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 APOL5Q9BWW9 433 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 WDR12Q9GZL7 423 aaKnown RBP6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 KIAA1586Q9HCI6 787 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 C11orf16Q9NQ32 467 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 SH3GLB2Q9NR46 395 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 SMYD2Q9NRG4 433 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 TMX2Q9Y320 296 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 CORINQ9Y5Q5 1042 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 LRRFIP2Q9Y608 721 aaKnown RBP6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 PLA2R1Q13018 1463 aa6.14□□□□□ -1.43
VPS35P1-201ENST00000563400 TET3O43151 1660 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 DEPDC5O75140 1603 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 MADDQ8WXG6 1647 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 UNC13BO14795 1591 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 RIMS1Q86UR5 1692 aaKnown RBP6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 ERVK-7P63135 1459 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 SPDYE3A6NKU9 549 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 EYA2O00167 538 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 TBX1O43435 398 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 CBFA2T2O43439 604 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 DNAJA2O60884 412 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 MTA2O94776 668 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 GFPT2O94808 682 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 HTR3BO95264 441 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 CPP00450 1065 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 CD4P01730 458 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 ITGAVP06756 1048 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 FAM200BP0CF97 657 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 GLULP15104 373 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 NME1P15531 152 aaKnown RBP6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 IL6STP40189 918 aaPredicted RBP6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 IL2P60568 153 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 SNRPNP63162 240 aaKnown RBP6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 ZNF252P-AS1Q0IIN9 211 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 PCSK7Q16549 785 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 RGL3Q3MIN7 710 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 GPATCH4Q5T3I0 446 aaKnown RBP6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 IFIT1BQ5T764 474 aaKnown RBP6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 COL13A1Q5TAT6 717 aaPredicted RBP6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 CATIPQ7Z7H3 387 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 SLFN12Q8IYM2 578 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 FAM156AQ8NDB6 213 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 TNFRSF25Q93038 417 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 BHMTQ93088 406 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 GCC1Q96CN9 775 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 ATG4CQ96DT6 458 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 SLC30A3Q99726 388 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 ZNF576Q9H609 170 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 NMRK2Q9NPI5 230 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 TMEM39AQ9NV64 488 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 HCN2Q9UL51 889 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 NAP1L2Q9ULW6 460 aaPredicted RBP6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 IQGAP3Q86VI3 1631 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 NOS1P29475 1434 aa6.13□□□□□ -1.43
VPS35P1-201ENST00000563400 PIK3R4Q99570 1358 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 TMEM2Q9UHN6 1383 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 EFCAB6Q5THR3 1501 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 CLTCQ00610 1675 aaKnown RBP6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 A0A096LPE4 126 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 A0A1W2PPZ6 126 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 FAM155AB1AL88 458 aaPredicted RBP6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 K7ENM7 598 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 PQBP1O60828 265 aaKnown RBP6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 SASH3O75995 380 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 FKBP9O95302 570 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 EGFRP00533 1210 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 IGHA1P01876 353 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 FGFR1P11362 822 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 HSPA6P17066 643 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 GRK6P43250 576 aa6.12□□□□□ -1.43
VPS35P1-201ENST00000563400 MPP1Q00013 466 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms