RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 PCDHA2Q9Y5H9 948 aa6.74□□□□□ -1.33
SCFD1-217ENST00000555953 CAPNS1P04632 268 aa6.73□□□□□ -1.33
SCFD1-217ENST00000555953 NKX3-2P78367 333 aa6.73□□□□□ -1.33
SCFD1-217ENST00000555953 KIAA2012Q0VF49 1180 aa6.73□□□□□ -1.33
SCFD1-217ENST00000555953 LGI4Q8N135 537 aa6.73□□□□□ -1.33
SCFD1-217ENST00000555953 ARRDC4Q8NCT1 418 aa6.73□□□□□ -1.33
SCFD1-217ENST00000555953 NGRNQ9NPE2 291 aaKnown RBP6.73□□□□□ -1.33
SCFD1-217ENST00000555953 TCRBV5S2A0A599 114 aa6.72□□□□□ -1.33
SCFD1-217ENST00000555953 H7BY64 318 aa6.72□□□□□ -1.33
SCFD1-217ENST00000555953 HGSO14964 777 aaPredicted RBP6.72□□□□□ -1.33
SCFD1-217ENST00000555953 ZNF28P17035 718 aa6.72□□□□□ -1.33
SCFD1-217ENST00000555953 ERCC5P28715 1186 aaPredicted RBP6.72□□□□□ -1.33
SCFD1-217ENST00000555953 LSAMPQ13449 338 aa6.72□□□□□ -1.33
SCFD1-217ENST00000555953 FXNQ16595 210 aa6.72□□□□□ -1.33
SCFD1-217ENST00000555953 STEAP3Q658P3 488 aa6.72□□□□□ -1.33
SCFD1-217ENST00000555953 VPS37DQ86XT2 251 aa6.72□□□□□ -1.33
SCFD1-217ENST00000555953 CHAMP1Q96JM3 812 aa6.72□□□□□ -1.33
SCFD1-217ENST00000555953 ZSWIM3Q96MP5 696 aa6.72□□□□□ -1.33
SCFD1-217ENST00000555953 CLDND1Q9NY35 253 aa6.72□□□□□ -1.33
SCFD1-217ENST00000555953 DTLQ9NZJ0 730 aa6.72□□□□□ -1.33
SCFD1-217ENST00000555953 PCDHB4Q9Y5E5 795 aa6.72□□□□□ -1.33
SCFD1-217ENST00000555953 TADA3O75528 432 aa6.71□□□□□ -1.34
SCFD1-217ENST00000555953 GJB6O95452 261 aa6.71□□□□□ -1.34
SCFD1-217ENST00000555953 GRIA2P42262 883 aa6.71□□□□□ -1.34
SCFD1-217ENST00000555953 CHRNA2Q15822 529 aa6.71□□□□□ -1.34
SCFD1-217ENST00000555953 EMC4Q5J8M3 183 aa6.71□□□□□ -1.34
SCFD1-217ENST00000555953 SLC35F1Q5T1Q4 408 aa6.71□□□□□ -1.34
SCFD1-217ENST00000555953 PRAMEF18Q5VWM3 479 aa6.71□□□□□ -1.34
SCFD1-217ENST00000555953 BORAQ6PGQ7 559 aa6.71□□□□□ -1.34
SCFD1-217ENST00000555953 FAM124AQ86V42 546 aa6.71□□□□□ -1.34
SCFD1-217ENST00000555953 TOE1Q96GM8 510 aaKnown RBP6.71□□□□□ -1.34
SCFD1-217ENST00000555953 LOXL4Q96JB6 756 aa6.71□□□□□ -1.34
SCFD1-217ENST00000555953 LCORQ96JN0 433 aaPredicted RBP6.71□□□□□ -1.34
SCFD1-217ENST00000555953 C8orf49Q96NF6 230 aa6.71□□□□□ -1.34
SCFD1-217ENST00000555953 SAMD11Q96NU1 681 aa6.71□□□□□ -1.34
SCFD1-217ENST00000555953 SSBP3Q9BWW4 388 aaPredicted RBP6.71□□□□□ -1.34
SCFD1-217ENST00000555953 TMPRSS5Q9H3S3 457 aa6.71□□□□□ -1.34
SCFD1-217ENST00000555953 FGRP09769 529 aa6.7□□□□□ -1.34
SCFD1-217ENST00000555953 SLC10A6Q3KNW5 377 aa6.7□□□□□ -1.34
SCFD1-217ENST00000555953 TEPPQ6URK8 271 aa6.7□□□□□ -1.34
SCFD1-217ENST00000555953 TTC9BQ8N6N2 239 aa6.7□□□□□ -1.34
SCFD1-217ENST00000555953 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.7□□□□□ -1.34
SCFD1-217ENST00000555953 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.7□□□□□ -1.349e-10■■□□□ 11.8
SCFD1-217ENST00000555953 CDIP1Q9H305 208 aa6.7□□□□□ -1.34
SCFD1-217ENST00000555953 ZNF408Q9H9D4 720 aa6.7□□□□□ -1.34
SCFD1-217ENST00000555953 WASF3Q9UPY6 502 aa6.7□□□□□ -1.34
SCFD1-217ENST00000555953 NPFFR2Q9Y5X5 522 aa6.7□□□□□ -1.34
SCFD1-217ENST00000555953 B4GALT3O60512 393 aa6.69□□□□□ -1.34
SCFD1-217ENST00000555953 LRG1P02750 347 aa6.69□□□□□ -1.34
SCFD1-217ENST00000555953 ZNF20P17024 532 aa6.69□□□□□ -1.34
SCFD1-217ENST00000555953 MLLT6P55198 1093 aaPredicted RBP6.69□□□□□ -1.34
SCFD1-217ENST00000555953 PPP2R2AP63151 447 aa6.69□□□□□ -1.34
SCFD1-217ENST00000555953 EEPD1Q7L9B9 569 aa6.69□□□□□ -1.34
SCFD1-217ENST00000555953 LIMS2Q7Z4I7 341 aa6.69□□□□□ -1.34
SCFD1-217ENST00000555953 MBD6Q96DN6 1003 aa6.69□□□□□ -1.34
SCFD1-217ENST00000555953 YTHDC1Q96MU7 727 aaKnown RBP6.69□□□□□ -1.34
SCFD1-217ENST00000555953 EPB41L1Q9H4G0 881 aa6.69□□□□□ -1.34
SCFD1-217ENST00000555953 ZNF536O15090 1300 aa6.69□□□□□ -1.34
SCFD1-217ENST00000555953 C9orf118A6NHY6 69 aa6.68□□□□□ -1.34
SCFD1-217ENST00000555953 DGKIO75912 1065 aa6.68□□□□□ -1.34
SCFD1-217ENST00000555953 TNFRSF1AP19438 455 aa6.68□□□□□ -1.34
SCFD1-217ENST00000555953 IL13P35225 146 aa6.68□□□□□ -1.34
SCFD1-217ENST00000555953 CPZQ66K79 652 aa6.68□□□□□ -1.34
SCFD1-217ENST00000555953 CLIC6Q96NY7 704 aa6.68□□□□□ -1.34
SCFD1-217ENST00000555953 C1QTNF3Q9BXJ4 246 aa6.68□□□□□ -1.34
SCFD1-217ENST00000555953 EPN3Q9H201 632 aa6.68□□□□□ -1.34
SCFD1-217ENST00000555953 MYOTQ9UBF9 498 aa6.68□□□□□ -1.34
SCFD1-217ENST00000555953 A0A1W2PQU0 124 aa6.67□□□□□ -1.34
SCFD1-217ENST00000555953 MSCO60682 206 aa6.67□□□□□ -1.34
SCFD1-217ENST00000555953 CYP1A1P04798 512 aaPredicted RBP6.67□□□□□ -1.34
SCFD1-217ENST00000555953 MAP4K2Q12851 820 aa6.67□□□□□ -1.34
SCFD1-217ENST00000555953 HOMEZQ8IX15 550 aa6.67□□□□□ -1.34
SCFD1-217ENST00000555953 ZCCHC14Q8WYQ9 949 aaKnown RBP6.67□□□□□ -1.34
SCFD1-217ENST00000555953 L2HGDHQ9H9P8 463 aa6.67□□□□□ -1.34
SCFD1-217ENST00000555953 RBPJLQ9UBG7 517 aa6.67□□□□□ -1.34
SCFD1-217ENST00000555953 PPARGC1AQ9UBK2 798 aaKnown RBP6.67□□□□□ -1.34
SCFD1-217ENST00000555953 CROTQ9UKG9 612 aa6.67□□□□□ -1.34
SCFD1-217ENST00000555953 MATN3O15232 486 aa6.66□□□□□ -1.34
SCFD1-217ENST00000555953 LAMTOR5O43504 91 aa6.66□□□□□ -1.34
SCFD1-217ENST00000555953 GNL2Q13823 731 aaKnown RBP6.66□□□□□ -1.34
SCFD1-217ENST00000555953 GLB1LQ6UWU2 654 aa6.66□□□□□ -1.34
SCFD1-217ENST00000555953 TMC5Q6UXY8 1006 aa6.66□□□□□ -1.34
SCFD1-217ENST00000555953 MCF2L2Q86YR7 1114 aa6.66□□□□□ -1.34
SCFD1-217ENST00000555953 CELF2-AS1Q8N7Q2 184 aa6.66□□□□□ -1.34
SCFD1-217ENST00000555953 PHOSPHO1Q8TCT1 267 aa6.66□□□□□ -1.34
SCFD1-217ENST00000555953 KCTD13Q8WZ19 329 aa6.66□□□□□ -1.34
SCFD1-217ENST00000555953 TMEM209Q96SK2 561 aa6.66□□□□□ -1.34
SCFD1-217ENST00000555953 TINF2Q9BSI4 451 aa6.66□□□□□ -1.34
SCFD1-217ENST00000555953 IER2Q9BTL4 223 aa6.66□□□□□ -1.34
SCFD1-217ENST00000555953 JAM3Q9BX67 310 aa6.66□□□□□ -1.34
SCFD1-217ENST00000555953 TMEM168Q9H0V1 697 aa6.66□□□□□ -1.34
SCFD1-217ENST00000555953 SMOC1Q9H4F8 434 aa6.66□□□□□ -1.34
SCFD1-217ENST00000555953 PPP4R1LQ9P1A2 415 aa6.66□□□□□ -1.34
SCFD1-217ENST00000555953 ST6GALNAC2Q9UJ37 374 aa6.66□□□□□ -1.34
SCFD1-217ENST00000555953 C1QTNF3-AMACRE9PGA6 284 aa6.65□□□□□ -1.34
SCFD1-217ENST00000555953 AGRPO00253 132 aa6.65□□□□□ -1.34
SCFD1-217ENST00000555953 DLX3O60479 287 aa6.65□□□□□ -1.34
SCFD1-217ENST00000555953 PKN3Q6P5Z2 889 aa6.65□□□□□ -1.34
SCFD1-217ENST00000555953 PIP4K2CQ8TBX8 421 aa6.65□□□□□ -1.34
SCFD1-217ENST00000555953 HNRNPLLQ8WVV9 542 aaKnown RBP6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms