RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 TTBK2Q6IQ55 1244 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 CATSPERGQ6ZRH7 1159 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 CCDC84Q86UT8 332 aaPredicted RBP8.53□□□□□ -1.04
CD44-228ENST00000528455 RAB11FIP4Q86YS3 637 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 TEX2Q8IWB9 1127 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 ADGRF4Q8IZF3 695 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 SPICE1Q8N0Z3 855 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 SIX5Q8N196 739 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 CMTR1Q8N1G2 835 aaKnown RBP8.53□□□□□ -1.04
CD44-228ENST00000528455 FAM184AQ8NB25 1140 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 RRP36Q96EU6 259 aaKnown RBP8.53□□□□□ -1.04
CD44-228ENST00000528455 UBA5Q9GZZ9 404 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 JMJD4Q9H9V9 463 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 VAT1LQ9HCJ6 419 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 SH3GLB2Q9NR46 395 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 RAB6BQ9NRW1 208 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 ADAMTS5Q9UNA0 930 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 MTMR7Q9Y216 660 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 SLC45A1Q9Y2W3 748 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 MYPNQ86TC9 1320 aa8.53□□□□□ -1.04
CD44-228ENST00000528455 OTOFQ9HC10 1997 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 PTPDC1A2A3K4 754 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 hCG_1984214I3L0E3 225 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 IGF2BP3O00425 579 aaKnown RBP eCLIP8.52□□□□□ -1.05
CD44-228ENST00000528455 ZBTB5O15062 677 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 JAK2O60674 1132 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 IL2RAP01589 272 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 BMP2P12643 396 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 XBP1P17861 261 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 VCAM1P19320 739 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 DDIT3P35638 169 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 GDF10P55107 478 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 NUCB2P80303 420 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 CLN3Q13286 438 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 PKN1Q16512 942 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 PFKFB3Q16875 520 aaPredicted RBP8.52□□□□□ -1.05
CD44-228ENST00000528455 CCDC96Q2M329 555 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 FAM83BQ5T0W9 1011 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 C6orf118Q5T5N4 469 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 SYDE2Q5VT97 1194 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 ZNF713Q8N859 430 aaPredicted RBP8.52□□□□□ -1.05
CD44-228ENST00000528455 FBXO18Q8NFZ0 1043 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 TPCN2Q8NHX9 752 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 PHKBQ93100 1093 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 ZFP42Q96MM3 310 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 PURBQ96QR8 312 aaKnown RBP8.52□□□□□ -1.05
CD44-228ENST00000528455 SLC26A6Q9BXS9 759 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 MAF1Q9H063 256 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 RPAP3Q9H6T3 665 aaPredicted RBP8.52□□□□□ -1.05
CD44-228ENST00000528455 PRR12Q9ULL5 1215 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 HRH3Q9Y5N1 445 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 PTPRFP10586 1907 aa8.52□□□□□ -1.05
CD44-228ENST00000528455 FRMPD2Q68DX3 1309 aaPredicted RBP8.52□□□□□ -1.05
CD44-228ENST00000528455 CCL15-CCL14A0A0B4J2E2 113 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 ZBED4O75132 1171 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 INHAP05111 366 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 SCG2P13521 617 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 SYT1P21579 422 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 SLC16A2P36021 539 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 MOGSQ13724 837 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 ZYXQ15942 572 aaKnown RBP8.51□□□□□ -1.05
CD44-228ENST00000528455 CCL15Q16663 113 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 SLC35G1Q2M3R5 365 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 GALNT17Q6IS24 598 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 GPAT2Q6NUI2 795 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 LBX2Q6XYB7 198 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 DDX11Q96FC9 970 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 PIGSQ96S52 555 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 INSM2Q96T92 566 aaPredicted RBP8.51□□□□□ -1.05
CD44-228ENST00000528455 NUP88Q99567 741 aaPredicted RBP8.51□□□□□ -1.05
CD44-228ENST00000528455 PTPN18Q99952 460 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 SLF1Q9BQI6 1058 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 ALG1Q9BT22 464 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 R3HDMLQ9H3Y0 253 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 ZCCHC17Q9NP64 241 aaKnown RBP8.51□□□□□ -1.05
CD44-228ENST00000528455 BARHL2Q9NY43 387 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 SEC63Q9UGP8 760 aaKnown RBP8.51□□□□□ -1.05
CD44-228ENST00000528455 AGTPBP1Q9UPW5 1226 aa8.51□□□□□ -1.05
CD44-228ENST00000528455 MEN1O00255 615 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 ATP2A1O14983 1001 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 STX6O43752 255 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 FLOT1O75955 427 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 CTSOP43234 321 aaPredicted RBP8.5□□□□□ -1.05
CD44-228ENST00000528455 OAZ1P54368 228 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 DPYDQ12882 1025 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 IKQ13123 557 aaPredicted RBP8.5□□□□□ -1.05
CD44-228ENST00000528455 CRHR2Q13324 411 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 TRIM29Q14134 588 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 ELOAQ14241 798 aaKnown RBP8.5□□□□□ -1.05
CD44-228ENST00000528455 GADL1Q6ZQY3 521 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 ANKRD23Q86SG2 305 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 ANKMY2Q8IV38 441 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 SAMD3Q8N6K7 520 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 MB21D1Q8N884 522 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.5□□□□□ -1.05
CD44-228ENST00000528455 CCDC12Q8WUD4 166 aaPredicted RBP8.5□□□□□ -1.05
CD44-228ENST00000528455 BRI3BPQ8WY22 251 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 KIFC2Q96AC6 838 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 ERO1AQ96HE7 468 aa8.5□□□□□ -1.05
CD44-228ENST00000528455 C8orf76Q96K31 380 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms