RNA–Protein interactions for RNA: ENST00000479894.1

HDLBP-238, Transcript of high density lipoprotein binding protein, human

TSL 5

Gene HDLBP, Length 840 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDLBP-238	ENST00000479894		M0R296	226 aa		18.21	■□□□□ 0.51
HDLBP-238	ENST00000479894	SLC3A2	P08195	630 aa	Known RBP	18.21	■□□□□ 0.51
HDLBP-238	ENST00000479894	GSPT1	P15170	499 aa	Known RBP	18.21	■□□□□ 0.51
HDLBP-238	ENST00000479894	CAST	P20810	708 aa	Known RBP	18.21	■□□□□ 0.51
HDLBP-238	ENST00000479894	CHMP4BP1	P59074	171 aa		18.21	■□□□□ 0.51
HDLBP-238	ENST00000479894	TRIM71	Q2Q1W2	868 aa	Known RBP	18.21	■□□□□ 0.51
HDLBP-238	ENST00000479894	BTNL9	Q6UXG8	535 aa		18.21	■□□□□ 0.51
HDLBP-238	ENST00000479894	SLC30A10	Q6XR72	485 aa		18.21	■□□□□ 0.51
HDLBP-238	ENST00000479894	RNF207	Q6ZRF8	634 aa		18.21	■□□□□ 0.51
HDLBP-238	ENST00000479894	TRIM67	Q6ZTA4	783 aa		18.21	■□□□□ 0.51
HDLBP-238	ENST00000479894	FBXO11	Q86XK2	927 aa		18.21	■□□□□ 0.51
HDLBP-238	ENST00000479894	SUGP1	Q8IWZ8	645 aa	Known RBP	18.21	■□□□□ 0.51
HDLBP-238	ENST00000479894	TMEM192	Q8IY95	271 aa		18.21	■□□□□ 0.51
HDLBP-238	ENST00000479894	MYOCD	Q8IZQ8	938 aa		18.21	■□□□□ 0.51
HDLBP-238	ENST00000479894	KATNAL1	Q9BW62	490 aa		18.21	■□□□□ 0.51
HDLBP-238	ENST00000479894	ARIH2	O95376	493 aa		18.2	■□□□□ 0.5
HDLBP-238	ENST00000479894	CALML3	P27482	149 aa		18.2	■□□□□ 0.5
HDLBP-238	ENST00000479894	SMAD4	Q13485	552 aa	Known RBP	18.2	■□□□□ 0.5
HDLBP-238	ENST00000479894	MBTPS1	Q14703	1052 aa		18.2	■□□□□ 0.5
HDLBP-238	ENST00000479894	MCMDC2	Q4G0Z9	681 aa		18.2	■□□□□ 0.5
HDLBP-238	ENST00000479894	ZMYM1	Q5SVZ6	1142 aa		18.2	■□□□□ 0.5
HDLBP-238	ENST00000479894	CCDC62	Q6P9F0	684 aa		18.2	■□□□□ 0.5
HDLBP-238	ENST00000479894	C7orf31	Q8N865	590 aa		18.2	■□□□□ 0.5
HDLBP-238	ENST00000479894	DCAF4	Q8WV16	495 aa		18.2	■□□□□ 0.5
HDLBP-238	ENST00000479894	AFG1L	Q8WV93	481 aa		18.2	■□□□□ 0.5
HDLBP-238	ENST00000479894	CLEC4D	Q8WXI8	215 aa		18.2	■□□□□ 0.5
HDLBP-238	ENST00000479894	OSBP2	Q969R2	916 aa		18.2	■□□□□ 0.5
HDLBP-238	ENST00000479894	LMAN2L	Q9H0V9	348 aa		18.2	■□□□□ 0.5
HDLBP-238	ENST00000479894	HDAC6	Q9UBN7	1215 aa		18.2	■□□□□ 0.5
HDLBP-238	ENST00000479894	STX8	Q9UNK0	236 aa		18.2	■□□□□ 0.5
HDLBP-238	ENST00000479894	PATL2	C9JE40	543 aa	Known RBP	18.19	■□□□□ 0.5
HDLBP-238	ENST00000479894	GPAA1	O43292	621 aa		18.19	■□□□□ 0.5
HDLBP-238	ENST00000479894	GH1	P01241	217 aa		18.19	■□□□□ 0.5
HDLBP-238	ENST00000479894	RPS6	P62753	249 aa	Known RBP	18.19	■□□□□ 0.5
HDLBP-238	ENST00000479894	ZNF618	Q5T7W0	954 aa		18.19	■□□□□ 0.5
HDLBP-238	ENST00000479894	IFNL3	Q8IZI9	196 aa		18.19	■□□□□ 0.5
HDLBP-238	ENST00000479894	DBF4B	Q8NFT6	615 aa		18.19	■□□□□ 0.5
HDLBP-238	ENST00000479894	TOP1MT	Q969P6	601 aa		18.19	■□□□□ 0.5
HDLBP-238	ENST00000479894	YME1L1	Q96TA2	773 aa		18.19	■□□□□ 0.5
HDLBP-238	ENST00000479894	NACAP1	Q9BZK3	213 aa		18.19	■□□□□ 0.5
HDLBP-238	ENST00000479894	STXBP3	O00186	592 aa		18.18	■□□□□ 0.5
HDLBP-238	ENST00000479894	CDC45	O75419	566 aa		18.18	■□□□□ 0.5
HDLBP-238	ENST00000479894	APP	P05067	770 aa		18.18	■□□□□ 0.5
HDLBP-238	ENST00000479894	DGKD	Q16760	1214 aa		18.18	■□□□□ 0.5
HDLBP-238	ENST00000479894	FBXL6	Q8N531	539 aa		18.18	■□□□□ 0.5
HDLBP-238	ENST00000479894	CHMP4C	Q96CF2	233 aa		18.18	■□□□□ 0.5
HDLBP-238	ENST00000479894	C5orf67	F2Z3F1	127 aa		18.17	■□□□□ 0.5
HDLBP-238	ENST00000479894	HAS3	O00219	553 aa		18.17	■□□□□ 0.5
HDLBP-238	ENST00000479894	RB1	P06400	928 aa		18.17	■□□□□ 0.5
HDLBP-238	ENST00000479894	NOV	P48745	357 aa		18.17	■□□□□ 0.5
HDLBP-238	ENST00000479894	PSEN2	P49810	448 aa		18.17	■□□□□ 0.5
HDLBP-238	ENST00000479894	ARHGAP1	Q07960	439 aa		18.17	■□□□□ 0.5
HDLBP-238	ENST00000479894	PLEKHG4	Q58EX7	1191 aa		18.17	■□□□□ 0.5
HDLBP-238	ENST00000479894	SYDE2	Q5VT97	1194 aa		18.17	■□□□□ 0.5
HDLBP-238	ENST00000479894	MAF1	Q9H063	256 aa		18.17	■□□□□ 0.5
HDLBP-238	ENST00000479894	ALG13	Q9NP73	1137 aa	Known RBP	18.17	■□□□□ 0.5
HDLBP-238	ENST00000479894	F2	P00734	622 aa		18.16	■□□□□ 0.5
HDLBP-238	ENST00000479894	ZXDA	P98168	799 aa		18.16	■□□□□ 0.5
HDLBP-238	ENST00000479894	DLX2	Q07687	328 aa	Predicted RBP	18.16	■□□□□ 0.5
HDLBP-238	ENST00000479894	CCDC96	Q2M329	555 aa		18.16	■□□□□ 0.5
HDLBP-238	ENST00000479894	WNT8B	Q93098	351 aa		18.16	■□□□□ 0.5
HDLBP-238	ENST00000479894	EMID1	Q96A84	441 aa	Predicted RBP	18.16	■□□□□ 0.5
HDLBP-238	ENST00000479894	IL17RB	Q9NRM6	502 aa		18.16	■□□□□ 0.5
HDLBP-238	ENST00000479894	CD207	Q9UJ71	328 aa		18.16	■□□□□ 0.5
HDLBP-238	ENST00000479894	RWDD3	Q9Y3V2	267 aa		18.16	■□□□□ 0.5
HDLBP-238	ENST00000479894	WDR19	Q8NEZ3	1342 aa		18.16	■□□□□ 0.5
HDLBP-238	ENST00000479894	MYH6	P13533	1939 aa		18.15	■□□□□ 0.5
HDLBP-238	ENST00000479894	TSPY2	A6NKD2	308 aa		18.15	■□□□□ 0.5
HDLBP-238	ENST00000479894	CHML	P26374	656 aa		18.15	■□□□□ 0.5
HDLBP-238	ENST00000479894	PPARA	Q07869	468 aa		18.15	■□□□□ 0.5
HDLBP-238	ENST00000479894	HYAL1	Q12794	435 aa		18.15	■□□□□ 0.5
HDLBP-238	ENST00000479894	TTBK2	Q6IQ55	1244 aa		18.15	■□□□□ 0.5
HDLBP-238	ENST00000479894	CWC27	Q6UX04	472 aa	Known RBP	18.15	■□□□□ 0.5
HDLBP-238	ENST00000479894	RASGRP2	Q7LDG7	609 aa		18.15	■□□□□ 0.5
HDLBP-238	ENST00000479894	RGS22	Q8NE09	1264 aa		18.15	■□□□□ 0.5
HDLBP-238	ENST00000479894	RSPH10B2	B2RC85	870 aa		18.14	■□□□□ 0.49
HDLBP-238	ENST00000479894	PROB1	E7EW31	1015 aa		18.14	■□□□□ 0.49
HDLBP-238	ENST00000479894	EYA4	O95677	639 aa		18.14	■□□□□ 0.49
HDLBP-238	ENST00000479894	RSPH10B	P0C881	870 aa		18.14	■□□□□ 0.49
HDLBP-238	ENST00000479894	SLC16A2	P36021	539 aa		18.14	■□□□□ 0.49
HDLBP-238	ENST00000479894	NUBP1	P53384	320 aa		18.14	■□□□□ 0.49
HDLBP-238	ENST00000479894	NMI	Q13287	307 aa	Predicted RBP	18.14	■□□□□ 0.49
HDLBP-238	ENST00000479894	MFSD10	Q14728	455 aa		18.14	■□□□□ 0.49
HDLBP-238	ENST00000479894	CLUL1	Q15846	466 aa		18.14	■□□□□ 0.49
HDLBP-238	ENST00000479894	LY6K	Q17RY6	165 aa		18.14	■□□□□ 0.49
HDLBP-238	ENST00000479894	KIAA0753	Q2KHM9	967 aa		18.14	■□□□□ 0.49
HDLBP-238	ENST00000479894	ERMP1	Q7Z2K6	904 aa		18.14	■□□□□ 0.49
HDLBP-238	ENST00000479894	SEPT8	Q92599	483 aa		18.14	■□□□□ 0.49
HDLBP-238	ENST00000479894	ALG1	Q9BT22	464 aa		18.14	■□□□□ 0.49
HDLBP-238	ENST00000479894	C11orf84	Q9BUA3	381 aa	Predicted RBP	18.14	■□□□□ 0.49
HDLBP-238	ENST00000479894	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	18.14	■□□□□ 0.49
HDLBP-238	ENST00000479894	KAT6A	Q92794	2004 aa		18.13	■□□□□ 0.49
HDLBP-238	ENST00000479894	LOC730098	B7Z3J9	87 aa		18.13	■□□□□ 0.49
HDLBP-238	ENST00000479894	TBX10	O75333	385 aa		18.13	■□□□□ 0.49
HDLBP-238	ENST00000479894	SIGLEC14	Q08ET2	396 aa		18.13	■□□□□ 0.49
HDLBP-238	ENST00000479894	CBX2	Q14781	532 aa	Predicted RBP	18.13	■□□□□ 0.49
HDLBP-238	ENST00000479894	SERINC5	Q86VE9	423 aa		18.13	■□□□□ 0.49
HDLBP-238	ENST00000479894	SKAP1	Q86WV1	359 aa		18.13	■□□□□ 0.49
HDLBP-238	ENST00000479894	NAPB	Q9H115	298 aa		18.13	■□□□□ 0.49
HDLBP-238	ENST00000479894	CCDC171	Q6TFL3	1326 aa		18.13	■□□□□ 0.49

Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms