RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 CDK17Q00537 523 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 KIAA0753Q2KHM9 967 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 NBPF9Q3BBW0 867 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 KRT71Q3SY84 523 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 PDXDC1Q6P996 788 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 MAEAQ7L5Y9 396 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 ADAT2Q7Z6V5 191 aaKnown RBP12.88□□□□□ -0.35
CPSF3-202ENST00000460593 ACTR5Q9H9F9 607 aaPredicted RBP12.88□□□□□ -0.35
CPSF3-202ENST00000460593 AMACRQ9UHK6 382 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 PNMA2Q9UL42 364 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 ASAP1Q9ULH1 1129 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 MAGEB6P1A0A0J9YX57 407 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 MYBL1P10243 752 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 SLC5A1P13866 664 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 COPB2P35606 906 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 MRPL12P52815 198 aaKnown RBP12.87□□□□□ -0.35
CPSF3-202ENST00000460593 POLR2FP61218 127 aaKnown RBP12.87□□□□□ -0.35
CPSF3-202ENST00000460593 PPP2R2AP63151 447 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 ASTE1Q2TB18 679 aaPredicted RBP12.87□□□□□ -0.35
CPSF3-202ENST00000460593 UBAP2Q5T6F2 1119 aaKnown RBP12.87□□□□□ -0.35
CPSF3-202ENST00000460593 MREGQ8N565 214 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 USP38Q8NB14 1042 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 WHAMMQ8TF30 809 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 CCT6BQ92526 530 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 PRCCQ92733 491 aaPredicted RBP12.87□□□□□ -0.35
CPSF3-202ENST00000460593 PLCB1Q9NQ66 1216 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 GRID2IPA4D2P6 1211 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 RTN2O75298 545 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 KCNMA1Q12791 1236 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 PFKFB3Q16875 520 aaPredicted RBP12.87□□□□□ -0.35
CPSF3-202ENST00000460593 RUBCNQ92622 972 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 TACO1Q9BSH4 297 aaKnown RBP12.87□□□□□ -0.35
CPSF3-202ENST00000460593 PLA2G12BQ9BX93 195 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.87□□□□□ -0.351e-6■■■□□ 15.3
CPSF3-202ENST00000460593 TBC1D7Q9P0N9 293 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 NUP188Q5SRE5 1749 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 TLDC2A0PJX2 215 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 BICDL2A1A5D9 508 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 HNRNPH3P31942 346 aaKnown RBP12.87□□□□□ -0.35
CPSF3-202ENST00000460593 RAPGEF1Q13905 1077 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 LETM2Q2VYF4 491 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 HEATR3Q7Z4Q2 680 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 FAM114A1Q8IWE2 563 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 TATDN2Q93075 761 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 JAG2Q9Y219 1238 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 KIF1AQ12756 1690 aa12.87□□□□□ -0.35
CPSF3-202ENST00000460593 A8MUI8 341 aa12.86□□□□□ -0.35
CPSF3-202ENST00000460593 LCA5LO95447 670 aa12.86□□□□□ -0.35
CPSF3-202ENST00000460593 DRD4P21917 467 aa12.86□□□□□ -0.35
CPSF3-202ENST00000460593 GKAP1Q5VSY0 366 aaPredicted RBP12.86□□□□□ -0.35
CPSF3-202ENST00000460593 FAM133AQ8N9E0 248 aa12.86□□□□□ -0.35
CPSF3-202ENST00000460593 SELENOSQ9BQE4 189 aa12.86□□□□□ -0.35
CPSF3-202ENST00000460593 RBM28Q9NW13 759 aaKnown RBP12.86□□□□□ -0.35
CPSF3-202ENST00000460593 PARP4Q9UKK3 1724 aaKnown RBP12.86□□□□□ -0.35
CPSF3-202ENST00000460593 FLT1P17948 1338 aa12.86□□□□□ -0.35
CPSF3-202ENST00000460593 PJA2O43164 708 aa12.86□□□□□ -0.35
CPSF3-202ENST00000460593 CTNND1O60716 968 aaKnown RBP12.86□□□□□ -0.35
CPSF3-202ENST00000460593 GOLGA8HP0CJ92 632 aa12.86□□□□□ -0.35
CPSF3-202ENST00000460593 GYG1P46976 350 aa12.86□□□□□ -0.35
CPSF3-202ENST00000460593 BIRC2Q13490 618 aa12.86□□□□□ -0.35
CPSF3-202ENST00000460593 CRYMQ14894 314 aa12.86□□□□□ -0.35
CPSF3-202ENST00000460593 MEI1Q5TIA1 1274 aa12.86□□□□□ -0.35
CPSF3-202ENST00000460593 EMC10Q5UCC4 262 aa12.86□□□□□ -0.35
CPSF3-202ENST00000460593 ARL6IP4Q66PJ3 421 aaKnown RBP12.86□□□□□ -0.35
CPSF3-202ENST00000460593 PYM1Q9BRP8 204 aaKnown RBP12.86□□□□□ -0.35
CPSF3-202ENST00000460593 LSM14BQ9BX40 385 aaKnown RBP12.86□□□□□ -0.35
CPSF3-202ENST00000460593 KIF9Q9HAQ2 790 aa12.86□□□□□ -0.35
CPSF3-202ENST00000460593 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.86□□□□□ -0.35
CPSF3-202ENST00000460593 PNPLA7Q6ZV29 1317 aa12.86□□□□□ -0.35
CPSF3-202ENST00000460593 A0A1B0GUA9 196 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 ENO4A6NNW6 628 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 TMCO5BA8MYB1 307 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 TTI1O43156 1089 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 SART1O43290 800 aaKnown RBP12.85□□□□□ -0.35
CPSF3-202ENST00000460593 SHBGP04278 402 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 GNAT2P19087 354 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 GCKP35557 465 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 IFNAR2P48551 515 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 FIGNQ5HY92 759 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 ARFGAP2Q8N6H7 521 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 SPDL1Q96EA4 605 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 TRIM51Q9BSJ1 452 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 PANK4Q9NVE7 773 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 PCDHA6Q9UN73 950 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 ATP8A1Q9Y2Q0 1164 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 PCDHA8Q9Y5H6 950 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 MGRN1O60291 552 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 TRAPPC10P48553 1259 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 DHX9Q08211 1270 aaKnown RBP12.85□□□□□ -0.35
CPSF3-202ENST00000460593 XRCC4Q13426 336 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 ZCRB1Q8TBF4 217 aaKnown RBP12.85□□□□□ -0.35
CPSF3-202ENST00000460593 ISCUQ9H1K1 167 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 ATP6V0A4Q9HBG4 840 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 AGAP1Q9UPQ3 857 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 PPP1R12AO14974 1030 aaPredicted RBP12.85□□□□□ -0.35
CPSF3-202ENST00000460593 CCNT1O60563 726 aaKnown RBP12.85□□□□□ -0.35
CPSF3-202ENST00000460593 CAND2O75155 1236 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 KCNJ2P63252 427 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 TNNC1P63316 161 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 DRP2Q13474 957 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms