RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 MED24O75448 989 aa12.17□□□□□ -0.46
DDX56-203ENST00000421223 SEC31AO94979 1220 aaKnown RBP12.17□□□□□ -0.46
DDX56-203ENST00000421223 CLK2P49760 499 aaKnown RBP12.17□□□□□ -0.46
DDX56-203ENST00000421223 ARID5AQ03989 594 aa12.17□□□□□ -0.46
DDX56-203ENST00000421223 COASYQ13057 564 aa12.17□□□□□ -0.46
DDX56-203ENST00000421223 FAM26FQ5R3K3 315 aa12.17□□□□□ -0.46
DDX56-203ENST00000421223 CCDC122Q5T0U0 273 aa12.17□□□□□ -0.46
DDX56-203ENST00000421223 NLRC4Q9NPP4 1024 aa12.17□□□□□ -0.46
DDX56-203ENST00000421223 FBXO28Q9NVF7 368 aa12.17□□□□□ -0.46
DDX56-203ENST00000421223 PRR12Q9ULL5 1215 aa12.17□□□□□ -0.46
DDX56-203ENST00000421223 MACROD2A1Z1Q3 448 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 CTAGE9A4FU28 777 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 TRIM14Q14142 442 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 PPP1R18Q6NYC8 613 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 MYOCDQ8IZQ8 938 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 ZNF507Q8TCN5 953 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 DRC1Q96MC2 740 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 TSG101Q99816 390 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 FAM170AA1A519 330 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 FAM86B1E9PN63 330 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 PLEKP08567 350 aaPredicted RBP12.16□□□□□ -0.46
DDX56-203ENST00000421223 FAM86B2P0C5J1 330 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 DPEP1P16444 411 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 KIAA1755Q5JYT7 1200 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 TATDN1Q6P1N9 297 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 KRT26Q7Z3Y9 468 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 TEX2Q8IWB9 1127 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 NOC3LQ8WTT2 800 aaKnown RBP12.16□□□□□ -0.46
DDX56-203ENST00000421223 DEF6Q9H4E7 631 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 RGL1Q9NZL6 768 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 SLX4Q8IY92 1834 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 GCFC2P16383 781 aaKnown RBP12.16□□□□□ -0.46
DDX56-203ENST00000421223 CLCN6P51797 869 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 MAP3K9P80192 1104 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 DMTNQ08495 405 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 CACNA2D4Q7Z3S7 1137 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 PIGOQ8TEQ8 1089 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 MKL1Q969V6 931 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 GLIS2Q9BZE0 524 aaPredicted RBP12.16□□□□□ -0.46
DDX56-203ENST00000421223 NDST4Q9H3R1 872 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 BCAS3Q9H6U6 928 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 ZNF70Q9UC06 446 aaPredicted RBP12.16□□□□□ -0.46
DDX56-203ENST00000421223 HDAC9Q9UKV0 1011 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 ATF5Q9Y2D1 282 aaPredicted RBP12.16□□□□□ -0.46
DDX56-203ENST00000421223 MYO3BQ8WXR4 1341 aa12.16□□□□□ -0.46
DDX56-203ENST00000421223 MYH8P13535 1937 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 SHTN1A0MZ66 631 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 DDX39AO00148 427 aaKnown RBP12.15□□□□□ -0.46
DDX56-203ENST00000421223 EPHB6O15197 1021 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 TADA3O75528 432 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 RHOXF2BP0C7M4 288 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 STAT2P52630 851 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 HDLBPQ00341 1268 aaKnown RBP12.15□□□□□ -0.46
DDX56-203ENST00000421223 APBA1Q02410 837 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 RRAGAQ7L523 313 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 CPXCR1Q8N123 301 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 C7orf43Q8WVR3 580 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 CAPZA3Q96KX2 299 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 RHOXF2Q9BQY4 288 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 ARHGEF10LQ9HCE6 1279 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 OGFRQ9NZT2 677 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 HDAC6Q9UBN7 1215 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 KCNG1Q9UIX4 513 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 CAPN11Q9UMQ6 739 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 MRFAP1Q9Y605 127 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 DUSP10Q9Y6W6 482 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 PVALEFA0A1B0GWK0 134 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 SPDYE2BA6NHP3 402 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 SPDYE6P0CI01 402 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 VWA3BQ502W6 1294 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 MIIPQ5JXC2 388 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 UTP14CQ5TAP6 766 aaKnown RBP12.15□□□□□ -0.46
DDX56-203ENST00000421223 CENPPQ6IPU0 288 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 RSBN1LQ6PCB5 846 aaPredicted RBP12.15□□□□□ -0.46
DDX56-203ENST00000421223 WDR59Q6PJI9 974 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 CATSPER3Q86XQ3 398 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 CCDC65Q8IXS2 484 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 ANKRD13CQ8N6S4 541 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 SUPT20HQ8NEM7 779 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 MTMR8Q96EF0 704 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 CCDC42Q96M95 316 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 HOMER2Q9NSB8 354 aa12.15□□□□□ -0.46
DDX56-203ENST00000421223 ORC2Q13416 577 aaPredicted RBP12.14□□□□□ -0.47
DDX56-203ENST00000421223 CTTNQ14247 550 aaKnown RBP12.14□□□□□ -0.47
DDX56-203ENST00000421223 TMCO3Q6UWJ1 677 aa12.14□□□□□ -0.47
DDX56-203ENST00000421223 TPH2Q8IWU9 490 aa12.14□□□□□ -0.47
DDX56-203ENST00000421223 HINFPQ9BQA5 517 aa12.14□□□□□ -0.47
DDX56-203ENST00000421223 NT5C3AQ9H0P0 336 aa12.14□□□□□ -0.47
DDX56-203ENST00000421223 NHEJ1Q9H9Q4 299 aaPredicted RBP12.14□□□□□ -0.47
DDX56-203ENST00000421223 DDX41Q9UJV9 622 aaKnown RBP12.14□□□□□ -0.47
DDX56-203ENST00000421223 SCN9AQ15858 1988 aa12.14□□□□□ -0.47
DDX56-203ENST00000421223 SRGAP2O75044 1071 aa12.14□□□□□ -0.47
DDX56-203ENST00000421223 ENTPD3O75355 529 aa12.14□□□□□ -0.47
DDX56-203ENST00000421223 EPS15P42566 896 aa12.14□□□□□ -0.47
DDX56-203ENST00000421223 USP11P51784 963 aa12.14□□□□□ -0.47
DDX56-203ENST00000421223 NBPF9Q3BBW0 867 aa12.14□□□□□ -0.47
DDX56-203ENST00000421223 TMEM119Q4V9L6 283 aa12.14□□□□□ -0.47
DDX56-203ENST00000421223 TDRD12Q587J7 1177 aaKnown RBP12.14□□□□□ -0.47
DDX56-203ENST00000421223 GUF1Q8N442 669 aaKnown RBP12.14□□□□□ -0.47
DDX56-203ENST00000421223 DNAJC19Q96DA6 116 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms