RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	WDR66	Q8TBY9	1149 aa		18.94	■□□□□ 0.62
VPS53-215	ENST00000573028	HYOU1	Q9Y4L1	999 aa		18.94	■□□□□ 0.62
VPS53-215	ENST00000573028	SPATA31A1	Q5TZJ5	1347 aa		18.94	■□□□□ 0.62
VPS53-215	ENST00000573028	PPFIA4	O75335	1185 aa		18.94	■□□□□ 0.62
VPS53-215	ENST00000573028	BTD	P43251	543 aa		18.94	■□□□□ 0.62
VPS53-215	ENST00000573028	NELFCD	Q8IXH7	590 aa		18.94	■□□□□ 0.62
VPS53-215	ENST00000573028	LRRC47	Q8N1G4	583 aa	Known RBP	18.94	■□□□□ 0.62
VPS53-215	ENST00000573028	IFT81	Q8WYA0	676 aa		18.94	■□□□□ 0.62
VPS53-215	ENST00000573028	ANKS1A	Q92625	1134 aa		18.94	■□□□□ 0.62
VPS53-215	ENST00000573028	GPCPD1	Q9NPB8	672 aa		18.94	■□□□□ 0.62
VPS53-215	ENST00000573028	TRAF5	O00463	557 aa		18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	CACNB1	Q02641	598 aa	Predicted RBP	18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	TMEM266	Q2M3C6	531 aa		18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	KCTD16	Q68DU8	428 aa		18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	C8orf74	Q6P047	294 aa		18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	ZNF662	Q6ZS27	426 aa		18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	KCNK18	Q7Z418	384 aa		18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	DDX12P	Q92771	950 aa		18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	MTMR8	Q96EF0	704 aa		18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	NYX	Q9GZU5	481 aa		18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	ZHX3	Q9H4I2	956 aa		18.93	■□□□□ 0.62
VPS53-215	ENST00000573028		A0A1W2PQJ5	194 aa		18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	RAD21	O60216	631 aa		18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	PTPRO	Q16827	1216 aa		18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	PNMA5	Q96PV4	448 aa		18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	RBM12	Q9NTZ6	932 aa	Known RBP	18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	RPS6KA5	O75582	802 aa		18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	UNC13D	Q70J99	1090 aa		18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	CCDC84	Q86UT8	332 aa	Predicted RBP	18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	AEN	Q8WTP8	325 aa	Known RBP	18.93	■□□□□ 0.62
VPS53-215	ENST00000573028	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	18.92	■□□□□ 0.62
VPS53-215	ENST00000573028	FTCD	O95954	541 aa		18.92	■□□□□ 0.62
VPS53-215	ENST00000573028	UBE2S	Q16763	222 aa		18.92	■□□□□ 0.62
VPS53-215	ENST00000573028	KCTD19	Q17RG1	926 aa	Predicted RBP	18.92	■□□□□ 0.62
VPS53-215	ENST00000573028	FIGN	Q5HY92	759 aa		18.92	■□□□□ 0.62
VPS53-215	ENST00000573028	SLC10A5	Q5PT55	438 aa		18.92	■□□□□ 0.62
VPS53-215	ENST00000573028	LZTS2	Q9BRK4	669 aa		18.92	■□□□□ 0.62
VPS53-215	ENST00000573028	SPZ1	Q9BXG8	430 aa		18.92	■□□□□ 0.62
VPS53-215	ENST00000573028	PACSIN2	Q9UNF0	486 aa	Predicted RBP	18.92	■□□□□ 0.62
VPS53-215	ENST00000573028	KRT79	Q5XKE5	535 aa		18.92	■□□□□ 0.62
VPS53-215	ENST00000573028	TSEN2	Q8NCE0	465 aa	Known RBP	18.92	■□□□□ 0.62
VPS53-215	ENST00000573028	TCP1	P17987	556 aa	Known RBP	18.91	■□□□□ 0.62
VPS53-215	ENST00000573028	SLC20A2	Q08357	652 aa		18.91	■□□□□ 0.62
VPS53-215	ENST00000573028	MMGT1	Q8N4V1	131 aa		18.91	■□□□□ 0.62
VPS53-215	ENST00000573028	CDCA7	Q9BWT1	371 aa	Predicted RBP	18.91	■□□□□ 0.62
VPS53-215	ENST00000573028	PPP1R2	P41236	205 aa		18.91	■□□□□ 0.62
VPS53-215	ENST00000573028	GNGT1	P63211	74 aa		18.91	■□□□□ 0.62
VPS53-215	ENST00000573028	GSTO1	P78417	241 aa		18.91	■□□□□ 0.62
VPS53-215	ENST00000573028	CDK17	Q00537	523 aa		18.91	■□□□□ 0.62
VPS53-215	ENST00000573028	PICALM	Q13492	652 aa		18.91	■□□□□ 0.62
VPS53-215	ENST00000573028	TSG101	Q99816	390 aa		18.91	■□□□□ 0.62
VPS53-215	ENST00000573028	ZNF287	Q9HBT7	754 aa		18.91	■□□□□ 0.62
VPS53-215	ENST00000573028	STIM2	Q9P246	746 aa		18.91	■□□□□ 0.62
VPS53-215	ENST00000573028	DLEC1	Q9Y238	1755 aa		18.91	■□□□□ 0.62
VPS53-215	ENST00000573028	ATP1A2	P50993	1020 aa		18.91	■□□□□ 0.62
VPS53-215	ENST00000573028	POLR2F	P61218	127 aa	Known RBP	18.91	■□□□□ 0.62
VPS53-215	ENST00000573028	ARL8A	Q96BM9	186 aa		18.91	■□□□□ 0.62
VPS53-215	ENST00000573028	NOX5	Q96PH1	765 aa		18.91	■□□□□ 0.62
VPS53-215	ENST00000573028	CASZ1	Q86V15	1759 aa		18.9	■□□□□ 0.62
VPS53-215	ENST00000573028	FGFR1OP	O95684	399 aa	Known RBP	18.9	■□□□□ 0.62
VPS53-215	ENST00000573028	LDHC	P07864	332 aa		18.9	■□□□□ 0.62
VPS53-215	ENST00000573028	IRAK1	P51617	712 aa		18.9	■□□□□ 0.62
VPS53-215	ENST00000573028	GUCY2F	P51841	1108 aa		18.9	■□□□□ 0.62
VPS53-215	ENST00000573028	HAUS3	Q68CZ6	603 aa		18.9	■□□□□ 0.62
VPS53-215	ENST00000573028	SH2D3C	Q8N5H7	860 aa		18.9	■□□□□ 0.62
VPS53-215	ENST00000573028	BCAS4	Q8TDM0	211 aa		18.9	■□□□□ 0.62
VPS53-215	ENST00000573028	TLR10	Q9BXR5	811 aa		18.9	■□□□□ 0.62
VPS53-215	ENST00000573028	CAPS2	Q9BXY5	557 aa		18.9	■□□□□ 0.62
VPS53-215	ENST00000573028	RAPGEF1	Q13905	1077 aa		18.9	■□□□□ 0.62
VPS53-215	ENST00000573028	HSF2BP	O75031	334 aa		18.89	■□□□□ 0.62
VPS53-215	ENST00000573028	FAM98C	Q17RN3	349 aa	Known RBP	18.89	■□□□□ 0.62
VPS53-215	ENST00000573028	GUF1	Q8N442	669 aa	Known RBP	18.89	■□□□□ 0.62
VPS53-215	ENST00000573028	BAP1	Q92560	729 aa		18.89	■□□□□ 0.62
VPS53-215	ENST00000573028	LSM14B	Q9BX40	385 aa	Known RBP	18.89	■□□□□ 0.62
VPS53-215	ENST00000573028	NFU1	Q9UMS0	254 aa		18.89	■□□□□ 0.62
VPS53-215	ENST00000573028	SAMM50	Q9Y512	469 aa		18.89	■□□□□ 0.62
VPS53-215	ENST00000573028	SCN7A	Q01118	1682 aa		18.89	■□□□□ 0.61
VPS53-215	ENST00000573028	MAGEA9	P43362	315 aa		18.89	■□□□□ 0.61
VPS53-215	ENST00000573028	ADCY7	P51828	1080 aa		18.89	■□□□□ 0.61
VPS53-215	ENST00000573028	FAM182B	Q5T319	152 aa		18.89	■□□□□ 0.61
VPS53-215	ENST00000573028	PDXDC1	Q6P996	788 aa		18.89	■□□□□ 0.61
VPS53-215	ENST00000573028	FAM170A	A1A519	330 aa		18.89	■□□□□ 0.61
VPS53-215	ENST00000573028	KRT14	P02533	472 aa		18.89	■□□□□ 0.61
VPS53-215	ENST00000573028	GUCY2D	Q02846	1103 aa		18.89	■□□□□ 0.61
VPS53-215	ENST00000573028	TTC31	Q49AM3	519 aa	Predicted RBP	18.89	■□□□□ 0.61
VPS53-215	ENST00000573028	MYOCD	Q8IZQ8	938 aa		18.89	■□□□□ 0.61
VPS53-215	ENST00000573028	PLCD3	Q8N3E9	789 aa		18.89	■□□□□ 0.61
VPS53-215	ENST00000573028	MICALL1	Q8N3F8	863 aa		18.89	■□□□□ 0.61
VPS53-215	ENST00000573028	RAD54L	Q92698	747 aa		18.89	■□□□□ 0.61
VPS53-215	ENST00000573028	RAB34	Q9BZG1	259 aa		18.89	■□□□□ 0.61
VPS53-215	ENST00000573028	ZEB2	O60315	1214 aa		18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	HNRNPH3	P31942	346 aa	Known RBP	18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	NEDD1	Q8NHV4	660 aa		18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	TBC1D5	Q92609	795 aa		18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	EPB41L5	Q9HCM4	733 aa		18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	PALM	O75781	387 aa		18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	CARS	P49589	748 aa	Known RBP	18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	EPHB4	P54760	987 aa		18.88	■□□□□ 0.61
VPS53-215	ENST00000573028	EHHADH	Q08426	723 aa		18.88	■□□□□ 0.61

Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms