RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 NT5DC1Q5TFE4 455 aa4.64□□□□□ -1.67
VPS35-207ENST00000568191 CD300LDQ6UXZ3 194 aa4.64□□□□□ -1.67
VPS35-207ENST00000568191 PPIL6Q8IXY8 311 aa4.64□□□□□ -1.67
VPS35-207ENST00000568191 CARFQ8N187 725 aa4.64□□□□□ -1.67
VPS35-207ENST00000568191 TTLL6Q8N841 843 aa4.64□□□□□ -1.67
VPS35-207ENST00000568191 SLC43A3Q8NBI5 491 aa4.64□□□□□ -1.67
VPS35-207ENST00000568191 SYT8Q8NBV8 401 aa4.64□□□□□ -1.67
VPS35-207ENST00000568191 NPLOC4Q8TAT6 608 aa4.64□□□□□ -1.67
VPS35-207ENST00000568191 KCTD13Q8WZ19 329 aa4.64□□□□□ -1.67
VPS35-207ENST00000568191 BCAS3Q9H6U6 928 aa4.64□□□□□ -1.67
VPS35-207ENST00000568191 NUB1Q9Y5A7 615 aa4.64□□□□□ -1.67
VPS35-207ENST00000568191 H7BY64 318 aa4.63□□□□□ -1.67
VPS35-207ENST00000568191 HGSO14964 777 aaPredicted RBP4.63□□□□□ -1.67
VPS35-207ENST00000568191 CYP7B1O75881 506 aa4.63□□□□□ -1.67
VPS35-207ENST00000568191 BCL6P41182 706 aa4.63□□□□□ -1.67
VPS35-207ENST00000568191 RBM25P49756 843 aaKnown RBP4.63□□□□□ -1.67
VPS35-207ENST00000568191 PLP2Q04941 152 aa4.63□□□□□ -1.67
VPS35-207ENST00000568191 HSP90AA2PQ14568 343 aaPredicted RBP4.63□□□□□ -1.67
VPS35-207ENST00000568191 INF2Q27J81 1249 aa4.63□□□□□ -1.67
VPS35-207ENST00000568191 DPH6Q7L8W6 267 aa4.63□□□□□ -1.67
VPS35-207ENST00000568191 TP53I13Q8NBR0 393 aaPredicted RBP4.63□□□□□ -1.67
VPS35-207ENST00000568191 DPF3Q92784 378 aa4.63□□□□□ -1.67
VPS35-207ENST00000568191 SPATA25Q9BR10 227 aa4.63□□□□□ -1.67
VPS35-207ENST00000568191 ZNF408Q9H9D4 720 aa4.63□□□□□ -1.67
VPS35-207ENST00000568191 PPP1R1BQ9UD71 204 aaPredicted RBP4.63□□□□□ -1.67
VPS35-207ENST00000568191 PALD1Q9ULE6 856 aa4.63□□□□□ -1.67
VPS35-207ENST00000568191 SIT1Q9Y3P8 196 aa4.63□□□□□ -1.67
VPS35-207ENST00000568191 PCDHA2Q9Y5H9 948 aa4.63□□□□□ -1.67
VPS35-207ENST00000568191 X6R8D5 127 aa4.63□□□□□ -1.67
VPS35-207ENST00000568191 ADAMTS20P59510 1910 aa4.62□□□□□ -1.67
VPS35-207ENST00000568191 E9PSI1 815 aa4.62□□□□□ -1.67
VPS35-207ENST00000568191 KRIT1O00522 736 aa4.62□□□□□ -1.67
VPS35-207ENST00000568191 U2SURPO15042 1029 aaKnown RBP4.62□□□□□ -1.67
VPS35-207ENST00000568191 GJB6O95452 261 aa4.62□□□□□ -1.67
VPS35-207ENST00000568191 PLA2G1BP04054 148 aaKnown RBP4.62□□□□□ -1.67
VPS35-207ENST00000568191 BUD31P41223 144 aaPredicted RBP4.62□□□□□ -1.67
VPS35-207ENST00000568191 VWA3BQ502W6 1294 aa4.62□□□□□ -1.67
VPS35-207ENST00000568191 ZFYVE27Q5T4F4 411 aa4.62□□□□□ -1.67
VPS35-207ENST00000568191 BORAQ6PGQ7 559 aa4.62□□□□□ -1.67
VPS35-207ENST00000568191 FAM126BQ8IXS8 530 aa4.62□□□□□ -1.67
VPS35-207ENST00000568191 KYQ8NBH2 561 aa4.62□□□□□ -1.67
VPS35-207ENST00000568191 ZNF526Q8TF50 670 aaPredicted RBP4.62□□□□□ -1.67
VPS35-207ENST00000568191 SGSM3Q96HU1 749 aa4.62□□□□□ -1.67
VPS35-207ENST00000568191 TRIM55Q9BYV6 548 aa4.62□□□□□ -1.67
VPS35-207ENST00000568191 CLDND1Q9NY35 253 aa4.62□□□□□ -1.67
VPS35-207ENST00000568191 FBLN5Q9UBX5 448 aa4.62□□□□□ -1.67
VPS35-207ENST00000568191 CNOT11Q9UKZ1 510 aaKnown RBP4.62□□□□□ -1.67
VPS35-207ENST00000568191 B2RBV5 119 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 SGSM2O43147 1006 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 APPP05067 770 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 FGRP09769 529 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 FPR2P25090 351 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 GFRA1P56159 465 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 MAP4K2Q12851 820 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 SMAD4Q13485 552 aaKnown RBP4.61□□□□□ -1.67
VPS35-207ENST00000568191 TESK1Q15569 626 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 STEAP3Q658P3 488 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 MBLAC2Q68D91 279 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 DBX2Q6ZNG2 339 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 ANKS3Q6ZW76 656 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 PRRT2Q7Z6L0 340 aaPredicted RBP4.61□□□□□ -1.67
VPS35-207ENST00000568191 MIB1Q86YT6 1006 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 TRIM48Q8IWZ4 208 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 ADGRG2Q8IZP9 1017 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 LINC00482Q8N8I6 264 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 RCBTB1Q8NDN9 531 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 TOE1Q96GM8 510 aaKnown RBP4.61□□□□□ -1.67
VPS35-207ENST00000568191 WRNIP1Q96S55 665 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 C11orf84Q9BUA3 381 aaPredicted RBP4.61□□□□□ -1.67
VPS35-207ENST00000568191 KRTAP4-5Q9BYR2 181 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 EPB41L1Q9H4G0 881 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 ZNF652Q9Y2D9 606 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 PCDHB4Q9Y5E5 795 aa4.61□□□□□ -1.67
VPS35-207ENST00000568191 A0A1B0GTL3 188 aa4.6□□□□□ -1.67
VPS35-207ENST00000568191 RPL13P26373 211 aaKnown RBP4.6□□□□□ -1.67
VPS35-207ENST00000568191 PPP2R2AP63151 447 aa4.6□□□□□ -1.67
VPS35-207ENST00000568191 SPATS1Q496A3 300 aa4.6□□□□□ -1.67
VPS35-207ENST00000568191 RSPO2Q6UXX9 243 aaPredicted RBP4.6□□□□□ -1.67
VPS35-207ENST00000568191 MCF2L2Q86YR7 1114 aa4.6□□□□□ -1.67
VPS35-207ENST00000568191 CKAP2LQ8IYA6 745 aa4.6□□□□□ -1.67
VPS35-207ENST00000568191 LRRC47Q8N1G4 583 aaKnown RBP4.6□□□□□ -1.67
VPS35-207ENST00000568191 Q8N1Y9 231 aa4.6□□□□□ -1.67
VPS35-207ENST00000568191 TMEM145Q8NBT3 493 aa4.6□□□□□ -1.67
VPS35-207ENST00000568191 KREMEN2Q8NCW0 462 aa4.6□□□□□ -1.67
VPS35-207ENST00000568191 PHOSPHO1Q8TCT1 267 aa4.6□□□□□ -1.67
VPS35-207ENST00000568191 CLIC6Q96NY7 704 aa4.6□□□□□ -1.67
VPS35-207ENST00000568191 IPO9Q96P70 1041 aaKnown RBP4.6□□□□□ -1.67
VPS35-207ENST00000568191 NOX5Q96PH1 765 aa4.6□□□□□ -1.67
VPS35-207ENST00000568191 TINF2Q9BSI4 451 aa4.6□□□□□ -1.67
VPS35-207ENST00000568191 BDH2Q9BUT1 245 aa4.6□□□□□ -1.67
VPS35-207ENST00000568191 LGR4Q9BXB1 951 aa4.6□□□□□ -1.67
VPS35-207ENST00000568191 ADAM7Q9H2U9 754 aa4.6□□□□□ -1.67
VPS35-207ENST00000568191 ST7Q9NRC1 585 aa4.6□□□□□ -1.67
VPS35-207ENST00000568191 PLA2G2DQ9UNK4 145 aa4.6□□□□□ -1.67
VPS35-207ENST00000568191 KRTAP9-7A8MTY7 169 aa4.59□□□□□ -1.67
VPS35-207ENST00000568191 K7ESM1 405 aa4.59□□□□□ -1.67
VPS35-207ENST00000568191 TBX1O43435 398 aa4.59□□□□□ -1.67
VPS35-207ENST00000568191 STK10O94804 968 aaKnown RBP4.59□□□□□ -1.67
VPS35-207ENST00000568191 C8BP07358 591 aa4.59□□□□□ -1.67
VPS35-207ENST00000568191 DDR2Q16832 855 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms