RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 ANKS4BQ8N8V4 417 aa8.6□□□□□ -1.03
RTF1-204ENST00000558117 ABHD4Q8TB40 342 aa8.6□□□□□ -1.03
RTF1-204ENST00000558117 BRF1Q92994 677 aa8.6□□□□□ -1.03
RTF1-204ENST00000558117 HAUS7Q99871 368 aa8.6□□□□□ -1.03
RTF1-204ENST00000558117 GBP3Q9H0R5 595 aa8.6□□□□□ -1.03
RTF1-204ENST00000558117 CCDC144AA2RUR9 1427 aa8.6□□□□□ -1.03
RTF1-204ENST00000558117 FITM1A5D6W6 292 aa8.59□□□□□ -1.03
RTF1-204ENST00000558117 B2RBV5 119 aa8.59□□□□□ -1.03
RTF1-204ENST00000558117 KLF4O43474 513 aa8.59□□□□□ -1.03
RTF1-204ENST00000558117 HPXP02790 462 aa8.59□□□□□ -1.03
RTF1-204ENST00000558117 GSNP06396 782 aa8.59□□□□□ -1.03
RTF1-204ENST00000558117 GLI1P08151 1106 aa8.59□□□□□ -1.03
RTF1-204ENST00000558117 ATP2B1P20020 1258 aa8.59□□□□□ -1.03
RTF1-204ENST00000558117 TXKP42681 527 aa8.59□□□□□ -1.03
RTF1-204ENST00000558117 CTSKP43235 329 aa8.59□□□□□ -1.03
RTF1-204ENST00000558117 CHRNEQ04844 493 aa8.59□□□□□ -1.03
RTF1-204ENST00000558117 HEATR6Q6AI08 1181 aaKnown RBP8.59□□□□□ -1.03
RTF1-204ENST00000558117 CRTC3Q6UUV7 619 aa8.59□□□□□ -1.03
RTF1-204ENST00000558117 C6orf15Q6UXA7 325 aaPredicted RBP8.59□□□□□ -1.03
RTF1-204ENST00000558117 SPPL2CQ8IUH8 684 aa8.59□□□□□ -1.03
RTF1-204ENST00000558117 SUSD2Q9UGT4 822 aa8.59□□□□□ -1.03
RTF1-204ENST00000558117 USP19O94966 1318 aa8.58□□□□□ -1.04
RTF1-204ENST00000558117 ABCA3Q99758 1704 aa8.58□□□□□ -1.04
RTF1-204ENST00000558117 KIAA1210Q9ULL0 1709 aa8.58□□□□□ -1.04
RTF1-204ENST00000558117 EPHX1P07099 455 aa8.58□□□□□ -1.04
RTF1-204ENST00000558117 BMP8BP34820 402 aa8.58□□□□□ -1.04
RTF1-204ENST00000558117 ERVFC1P60507 584 aa8.58□□□□□ -1.04
RTF1-204ENST00000558117 FYB2Q5VWT5 728 aa8.58□□□□□ -1.04
RTF1-204ENST00000558117 MPZL3Q6UWV2 235 aa8.58□□□□□ -1.04
RTF1-204ENST00000558117 LILRA2Q8N149 483 aa8.58□□□□□ -1.04
RTF1-204ENST00000558117 CELF2-AS1Q8N7Q2 184 aa8.58□□□□□ -1.04
RTF1-204ENST00000558117 FGD4Q96M96 766 aa8.58□□□□□ -1.04
RTF1-204ENST00000558117 KLHL25Q9H0H3 589 aa8.58□□□□□ -1.04
RTF1-204ENST00000558117 ST7Q9NRC1 585 aa8.58□□□□□ -1.04
RTF1-204ENST00000558117 FHOD1Q9Y613 1164 aa8.58□□□□□ -1.04
RTF1-204ENST00000558117 PDE4DIPQ5VU43 2346 aa8.57□□□□□ -1.04
RTF1-204ENST00000558117 STK10O94804 968 aaKnown RBP8.57□□□□□ -1.04
RTF1-204ENST00000558117 GTF2F1P35269 517 aaKnown RBP eCLIP8.57□□□□□ -1.04
RTF1-204ENST00000558117 TXNRD1Q16881 649 aa8.57□□□□□ -1.04
RTF1-204ENST00000558117 ADAT2Q7Z6V5 191 aaKnown RBP8.57□□□□□ -1.04
RTF1-204ENST00000558117 FAM178BQ8IXR5 827 aa8.57□□□□□ -1.04
RTF1-204ENST00000558117 FIBCD1Q8N539 461 aa8.57□□□□□ -1.04
RTF1-204ENST00000558117 ABHD8Q96I13 439 aa8.57□□□□□ -1.04
RTF1-204ENST00000558117 FMNL2Q96PY5 1086 aa8.57□□□□□ -1.04
RTF1-204ENST00000558117 CDADC1Q9BWV3 514 aa8.57□□□□□ -1.04
RTF1-204ENST00000558117 RRP7BPQ9NSQ0 103 aa8.57□□□□□ -1.04
RTF1-204ENST00000558117 FAM53CQ9NYF3 392 aa8.57□□□□□ -1.04
RTF1-204ENST00000558117 WHRNQ9P202 907 aa8.57□□□□□ -1.04
RTF1-204ENST00000558117 SF3B6Q9Y3B4 125 aaKnown RBP8.57□□□□□ -1.04
RTF1-204ENST00000558117 TNRC18O15417 2968 aaPredicted RBP8.56□□□□□ -1.04
RTF1-204ENST00000558117 TECPR2O15040 1411 aa8.56□□□□□ -1.04
RTF1-204ENST00000558117 COL14A1Q05707 1796 aaKnown RBP8.56□□□□□ -1.04
RTF1-204ENST00000558117 FCRL2Q96LA5 508 aaPredicted RBP8.56□□□□□ -1.04
RTF1-204ENST00000558117 NOL6Q9H6R4 1146 aaKnown RBP8.56□□□□□ -1.04
RTF1-204ENST00000558117 R3HCC1Q9Y3T6 440 aaKnown RBP8.56□□□□□ -1.04
RTF1-204ENST00000558117 SBNO1A3KN83 1393 aa8.56□□□□□ -1.04
RTF1-204ENST00000558117 CDC42BPGQ6DT37 1551 aa8.56□□□□□ -1.04
RTF1-204ENST00000558117 PRAG1Q86YV5 1406 aa8.55□□□□□ -1.04
RTF1-204ENST00000558117 H0Y8X5 98 aa8.55□□□□□ -1.04
RTF1-204ENST00000558117 PPM1BO75688 479 aa8.55□□□□□ -1.04
RTF1-204ENST00000558117 DDAH1O94760 285 aa8.55□□□□□ -1.04
RTF1-204ENST00000558117 ZNF205O95201 554 aa8.55□□□□□ -1.04
RTF1-204ENST00000558117 NAT2P11245 290 aa8.55□□□□□ -1.04
RTF1-204ENST00000558117 FSTL1Q12841 308 aa8.55□□□□□ -1.04
RTF1-204ENST00000558117 SLC14A2Q15849 920 aa8.55□□□□□ -1.04
RTF1-204ENST00000558117 FXNQ16595 210 aa8.55□□□□□ -1.04
RTF1-204ENST00000558117 MRM1Q6IN84 353 aaKnown RBP8.55□□□□□ -1.04
RTF1-204ENST00000558117 ZNF513Q8N8E2 541 aaPredicted RBP8.55□□□□□ -1.04
RTF1-204ENST00000558117 NAT16Q8N8M0 369 aa8.55□□□□□ -1.04
RTF1-204ENST00000558117 ADCY4Q8NFM4 1077 aa8.55□□□□□ -1.04
RTF1-204ENST00000558117 MAP6Q96JE9 813 aa8.55□□□□□ -1.04
RTF1-204ENST00000558117 ZDHHC15Q96MV8 337 aa8.55□□□□□ -1.04
RTF1-204ENST00000558117 GPR160Q9UJ42 338 aa8.55□□□□□ -1.04
RTF1-204ENST00000558117 SUGT1Q9Y2Z0 365 aa8.55□□□□□ -1.04
RTF1-204ENST00000558117 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.55□□□□□ -1.04
RTF1-204ENST00000558117 ARHGEF10O15013 1369 aa8.55□□□□□ -1.04
RTF1-204ENST00000558117 HFM1A2PYH4 1435 aa8.54□□□□□ -1.04
RTF1-204ENST00000558117 DHX57Q6P158 1386 aaKnown RBP8.54□□□□□ -1.04
RTF1-204ENST00000558117 A0A087WZG4 1122 aa8.54□□□□□ -1.04
RTF1-204ENST00000558117 TMEM82A0PJX8 343 aa8.54□□□□□ -1.04
RTF1-204ENST00000558117 USP2O75604 605 aaPredicted RBP8.54□□□□□ -1.04
RTF1-204ENST00000558117 GJB6O95452 261 aa8.54□□□□□ -1.04
RTF1-204ENST00000558117 VAV1P15498 845 aa8.54□□□□□ -1.04
RTF1-204ENST00000558117 POLD1P28340 1107 aa8.54□□□□□ -1.04
RTF1-204ENST00000558117 TRHRP34981 398 aaPredicted RBP8.54□□□□□ -1.04
RTF1-204ENST00000558117 KIR2DL1P43626 348 aaPredicted RBP8.54□□□□□ -1.04
RTF1-204ENST00000558117 KIR2DL2P43627 348 aaPredicted RBP8.54□□□□□ -1.04
RTF1-204ENST00000558117 NOP2P46087 812 aaKnown RBP8.54□□□□□ -1.04
RTF1-204ENST00000558117 NCAPHQ15003 741 aa8.54□□□□□ -1.04
RTF1-204ENST00000558117 NR0B2Q15466 257 aa8.54□□□□□ -1.04
RTF1-204ENST00000558117 ZPBP2Q6X784 338 aa8.54□□□□□ -1.04
RTF1-204ENST00000558117 LINC01599Q8WXQ3 324 aa8.54□□□□□ -1.04
RTF1-204ENST00000558117 NMRK2Q9NPI5 230 aa8.54□□□□□ -1.04
RTF1-204ENST00000558117 EBF1Q9UH73 591 aa8.54□□□□□ -1.04
RTF1-204ENST00000558117 ZNF281Q9Y2X9 895 aa8.54□□□□□ -1.04
RTF1-204ENST00000558117 ANKRD34BA5PLL1 514 aa8.53□□□□□ -1.04
RTF1-204ENST00000558117 LRRC10BA6NIK2 292 aa8.53□□□□□ -1.04
RTF1-204ENST00000558117 GSTM1P09488 218 aa8.53□□□□□ -1.04
RTF1-204ENST00000558117 POU4F1Q01851 419 aa8.53□□□□□ -1.04
RTF1-204ENST00000558117 RAB33AQ14088 237 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms