RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 USP11P51784 963 aa18.23■□□□□ 0.51
COL4A1-204ENST00000543140 ARHGAP4P98171 946 aa18.23■□□□□ 0.51
COL4A1-204ENST00000543140 SAMD1Q6SPF0 538 aaPredicted RBP18.23■□□□□ 0.51
COL4A1-204ENST00000543140 PSMD1Q99460 953 aa18.23■□□□□ 0.51
COL4A1-204ENST00000543140 NAA15Q9BXJ9 866 aaKnown RBP18.23■□□□□ 0.51
COL4A1-204ENST00000543140 IRX2Q9BZI1 471 aaPredicted RBP18.23■□□□□ 0.51
COL4A1-204ENST00000543140 TMEM39BQ9GZU3 492 aa18.23■□□□□ 0.51
COL4A1-204ENST00000543140 L2HGDHQ9H9P8 463 aa18.23■□□□□ 0.51
COL4A1-204ENST00000543140 HERC5Q9UII4 1024 aaKnown RBP18.23■□□□□ 0.51
COL4A1-204ENST00000543140 SCAF8Q9UPN6 1271 aaKnown RBP18.23■□□□□ 0.51
COL4A1-204ENST00000543140 URI1O94763 535 aaPredicted RBP18.23■□□□□ 0.51
COL4A1-204ENST00000543140 KRT9P35527 623 aa18.23■□□□□ 0.51
COL4A1-204ENST00000543140 ZYXQ15942 572 aaKnown RBP18.23■□□□□ 0.51
COL4A1-204ENST00000543140 PDCL2Q8N4E4 241 aa18.23■□□□□ 0.51
COL4A1-204ENST00000543140 GLIS3Q8NEA6 775 aa18.23■□□□□ 0.51
COL4A1-204ENST00000543140 CNOT6LQ96LI5 555 aaKnown RBP18.23■□□□□ 0.51
COL4A1-204ENST00000543140 PRR12Q9ULL5 1215 aa18.23■□□□□ 0.51
COL4A1-204ENST00000543140 KIAA1024Q9UPX6 916 aa18.23■□□□□ 0.51
COL4A1-204ENST00000543140 ADGRG1Q9Y653 693 aa18.23■□□□□ 0.51
COL4A1-204ENST00000543140 LRRC41Q15345 812 aa18.22■□□□□ 0.51
COL4A1-204ENST00000543140 ZNF507Q8TCN5 953 aa18.22■□□□□ 0.51
COL4A1-204ENST00000543140 FAM151AQ8WW52 585 aa18.22■□□□□ 0.51
COL4A1-204ENST00000543140 CNTNAP1P78357 1384 aa18.22■□□□□ 0.51
COL4A1-204ENST00000543140 PVALEFA0A1B0GWK0 134 aa18.22■□□□□ 0.51
COL4A1-204ENST00000543140 SPDYE3A6NKU9 549 aa18.22■□□□□ 0.51
COL4A1-204ENST00000543140 E9PMD0 336 aa18.22■□□□□ 0.51
COL4A1-204ENST00000543140 ERVK-24P63145 666 aa18.22■□□□□ 0.51
COL4A1-204ENST00000543140 KCNMB3Q9NPA1 279 aa18.22■□□□□ 0.51
COL4A1-204ENST00000543140 TTC26A0AVF1 554 aa18.21■□□□□ 0.51
COL4A1-204ENST00000543140 POTEB3A0JP26 581 aa18.21■□□□□ 0.51
COL4A1-204ENST00000543140 GOLGA6L9A6NEM1 432 aa18.21■□□□□ 0.51
COL4A1-204ENST00000543140 POTECB2RU33 542 aa18.21■□□□□ 0.51
COL4A1-204ENST00000543140 OPLAHO14841 1288 aa18.21■□□□□ 0.51
COL4A1-204ENST00000543140 MTIF2P46199 727 aaKnown RBP18.21■□□□□ 0.51
COL4A1-204ENST00000543140 FAM83BQ5T0W9 1011 aa18.21■□□□□ 0.51
COL4A1-204ENST00000543140 POTEBQ6S5H4 581 aa18.21■□□□□ 0.51
COL4A1-204ENST00000543140 NOC3LQ8WTT2 800 aaKnown RBP18.21■□□□□ 0.51
COL4A1-204ENST00000543140 CCDC51Q96ER9 411 aa18.21■□□□□ 0.51
COL4A1-204ENST00000543140 ERO1AQ96HE7 468 aa18.21■□□□□ 0.51
COL4A1-204ENST00000543140 NAP1L4Q99733 375 aaKnown RBP18.21■□□□□ 0.51
COL4A1-204ENST00000543140 ARHGEF10LQ9HCE6 1279 aa18.21■□□□□ 0.51
COL4A1-204ENST00000543140 STAT2P52630 851 aa18.21■□□□□ 0.51
COL4A1-204ENST00000543140 RAD51AP2Q09MP3 1159 aa18.21■□□□□ 0.51
COL4A1-204ENST00000543140 AP3B2Q13367 1082 aa18.21■□□□□ 0.51
COL4A1-204ENST00000543140 SYCP1Q15431 976 aa18.21■□□□□ 0.51
COL4A1-204ENST00000543140 SPDYE2Q495Y8 402 aa18.21■□□□□ 0.51
COL4A1-204ENST00000543140 ERCC3P19447 782 aa18.2■□□□□ 0.5
COL4A1-204ENST00000543140 KLK7P49862 253 aa18.2■□□□□ 0.5
COL4A1-204ENST00000543140 CACNB1Q02641 598 aaPredicted RBP18.2■□□□□ 0.5
COL4A1-204ENST00000543140 SF3B2Q13435 895 aaKnown RBP18.2■□□□□ 0.5
COL4A1-204ENST00000543140 TRIM14Q14142 442 aa18.2■□□□□ 0.5
COL4A1-204ENST00000543140 CENPPQ6IPU0 288 aa18.2■□□□□ 0.5
COL4A1-204ENST00000543140 ACRBPQ8NEB7 543 aa18.2■□□□□ 0.5
COL4A1-204ENST00000543140 TBC1D7Q9P0N9 293 aa18.2■□□□□ 0.5
COL4A1-204ENST00000543140 COL2A1P02458 1487 aaPredicted RBP18.2■□□□□ 0.5
COL4A1-204ENST00000543140 CYP3A7-CYP3A51PA0A087WV96 503 aa18.2■□□□□ 0.5
COL4A1-204ENST00000543140 FAM86B1E9PN63 330 aa18.2■□□□□ 0.5
COL4A1-204ENST00000543140 FAM86B2P0C5J1 330 aa18.2■□□□□ 0.5
COL4A1-204ENST00000543140 CYP3A7P24462 503 aa18.2■□□□□ 0.5
COL4A1-204ENST00000543140 CASQ1P31415 396 aa18.2■□□□□ 0.5
COL4A1-204ENST00000543140 ELF2Q15723 593 aa18.2■□□□□ 0.5
COL4A1-204ENST00000543140 CCDC174Q6PII3 467 aa18.2■□□□□ 0.5
COL4A1-204ENST00000543140 BTNL9Q6UXG8 535 aa18.2■□□□□ 0.5
COL4A1-204ENST00000543140 CYP2W1Q8TAV3 490 aa18.2■□□□□ 0.5
COL4A1-204ENST00000543140 CRYGNQ8WXF5 182 aa18.2■□□□□ 0.5
COL4A1-204ENST00000543140 CHP1Q99653 195 aa18.2■□□□□ 0.5
COL4A1-204ENST00000543140 NOC4LQ9BVI4 516 aaKnown RBP18.2■□□□□ 0.5
COL4A1-204ENST00000543140 ZBTB21Q9ULJ3 1066 aa18.2■□□□□ 0.5
COL4A1-204ENST00000543140 NPHP3-ACAD11A0A0J9YXS1 232 aa18.19■□□□□ 0.5
COL4A1-204ENST00000543140 DNM2P50570 870 aa18.19■□□□□ 0.5
COL4A1-204ENST00000543140 TBC1D8BQ0IIM8 1120 aa18.19■□□□□ 0.5
COL4A1-204ENST00000543140 GRIPAP1Q4V328 841 aa18.19■□□□□ 0.5
COL4A1-204ENST00000543140 CCDC84Q86UT8 332 aaPredicted RBP18.19■□□□□ 0.5
COL4A1-204ENST00000543140 TMTC1Q8IUR5 882 aa18.19■□□□□ 0.5
COL4A1-204ENST00000543140 NIM1KQ8IY84 436 aa18.19■□□□□ 0.5
COL4A1-204ENST00000543140 DNAJC19Q96DA6 116 aa18.19■□□□□ 0.5
COL4A1-204ENST00000543140 ZNRF3Q9ULT6 936 aa18.19■□□□□ 0.5
COL4A1-204ENST00000543140 SHTN1A0MZ66 631 aa18.19■□□□□ 0.5
COL4A1-204ENST00000543140 MED24O75448 989 aa18.19■□□□□ 0.5
COL4A1-204ENST00000543140 PPP1R2P41236 205 aa18.19■□□□□ 0.5
COL4A1-204ENST00000543140 BAG6P46379 1132 aa18.19■□□□□ 0.5
COL4A1-204ENST00000543140 FAM114A1Q8IWE2 563 aa18.19■□□□□ 0.5
COL4A1-204ENST00000543140 TBC1D5Q92609 795 aa18.19■□□□□ 0.5
COL4A1-204ENST00000543140 KIFC2Q96AC6 838 aa18.19■□□□□ 0.5
COL4A1-204ENST00000543140 GTPBP4Q9BZE4 634 aaKnown RBP18.19■□□□□ 0.5
COL4A1-204ENST00000543140 NT5C3AQ9H0P0 336 aa18.19■□□□□ 0.5
COL4A1-204ENST00000543140 TMX2Q9Y320 296 aa18.19■□□□□ 0.5
COL4A1-204ENST00000543140 LUC7L2Q9Y383 392 aaKnown RBP18.19■□□□□ 0.5
COL4A1-204ENST00000543140 A0A1W2PQC6 194 aa18.18■□□□□ 0.5
COL4A1-204ENST00000543140 POTEFA5A3E0 1075 aa18.18■□□□□ 0.5
COL4A1-204ENST00000543140 POTEIP0CG38 1075 aa18.18■□□□□ 0.5
COL4A1-204ENST00000543140 FECHP22830 423 aa18.18■□□□□ 0.5
COL4A1-204ENST00000543140 COASYQ13057 564 aa18.18■□□□□ 0.5
COL4A1-204ENST00000543140 NBPF9Q3BBW0 867 aa18.18■□□□□ 0.5
COL4A1-204ENST00000543140 MIIPQ5JXC2 388 aa18.18■□□□□ 0.5
COL4A1-204ENST00000543140 POTEGQ6S5H5 508 aa18.18■□□□□ 0.5
COL4A1-204ENST00000543140 POTEEQ6S8J3 1075 aa18.18■□□□□ 0.5
COL4A1-204ENST00000543140 CYP26C1Q6V0L0 522 aa18.18■□□□□ 0.5
COL4A1-204ENST00000543140 SLFN12Q8IYM2 578 aa18.18■□□□□ 0.5
COL4A1-204ENST00000543140 ETNPPLQ8TBG4 499 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms