RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 AMPD3Q01432 767 aa16.26■□□□□ 0.19
CLIP1-216ENST00000541410 KCNJ12Q14500 433 aa16.26■□□□□ 0.19
CLIP1-216ENST00000541410 NCAPH2Q6IBW4 605 aa16.26■□□□□ 0.19
CLIP1-216ENST00000541410 CHURC1Q8WUH1 139 aa16.26■□□□□ 0.19
CLIP1-216ENST00000541410 DDX12PQ92771 950 aa16.26■□□□□ 0.19
CLIP1-216ENST00000541410 SRRTQ9BXP5 876 aaKnown RBP16.26■□□□□ 0.19
CLIP1-216ENST00000541410 NPHP3-ACAD11A0A0J9YXS1 232 aa16.26■□□□□ 0.19
CLIP1-216ENST00000541410 N4BP3O15049 544 aa16.26■□□□□ 0.19
CLIP1-216ENST00000541410 MYL1P05976 194 aa16.26■□□□□ 0.19
CLIP1-216ENST00000541410 SREBF1P36956 1147 aa16.26■□□□□ 0.19
CLIP1-216ENST00000541410 TNFAIP1Q13829 316 aa16.26■□□□□ 0.19
CLIP1-216ENST00000541410 IRF2BP1Q8IU81 584 aa16.26■□□□□ 0.19
CLIP1-216ENST00000541410 CCAR2Q8N163 923 aaKnown RBP16.26■□□□□ 0.19
CLIP1-216ENST00000541410 RANBP17Q9H2T7 1088 aaKnown RBP16.26■□□□□ 0.19
CLIP1-216ENST00000541410 MAGEF1Q9HAY2 307 aa16.26■□□□□ 0.19
CLIP1-216ENST00000541410 TBC1D7Q9P0N9 293 aa16.26■□□□□ 0.19
CLIP1-216ENST00000541410 POTEFA5A3E0 1075 aa16.25■□□□□ 0.19
CLIP1-216ENST00000541410 PSMA7O14818 248 aa16.25■□□□□ 0.19
CLIP1-216ENST00000541410 MED24O75448 989 aa16.25■□□□□ 0.19
CLIP1-216ENST00000541410 POTEIP0CG38 1075 aa16.25■□□□□ 0.19
CLIP1-216ENST00000541410 MAP3K10Q02779 954 aa16.25■□□□□ 0.19
CLIP1-216ENST00000541410 TBX2Q13207 712 aaPredicted RBP16.25■□□□□ 0.19
CLIP1-216ENST00000541410 LRRC41Q15345 812 aa16.25■□□□□ 0.19
CLIP1-216ENST00000541410 TMEM119Q4V9L6 283 aa16.25■□□□□ 0.19
CLIP1-216ENST00000541410 TCP11X2Q5H9J9 407 aa16.25■□□□□ 0.19
CLIP1-216ENST00000541410 ANGEL2Q5VTE6 544 aaKnown RBP16.25■□□□□ 0.19
CLIP1-216ENST00000541410 POTEGQ6S5H5 508 aa16.25■□□□□ 0.19
CLIP1-216ENST00000541410 POTEEQ6S8J3 1075 aa16.25■□□□□ 0.19
CLIP1-216ENST00000541410 DLK2Q6UY11 383 aa16.25■□□□□ 0.19
CLIP1-216ENST00000541410 LDHDQ86WU2 507 aa16.25■□□□□ 0.19
CLIP1-216ENST00000541410 ETNPPLQ8TBG4 499 aa16.25■□□□□ 0.19
CLIP1-216ENST00000541410 TRPM4Q8TD43 1214 aa16.25■□□□□ 0.19
CLIP1-216ENST00000541410 TSC1Q92574 1164 aa16.25■□□□□ 0.19
CLIP1-216ENST00000541410 ZKSCAN4Q969J2 545 aaPredicted RBP16.25■□□□□ 0.19
CLIP1-216ENST00000541410 HOMER2Q9NSB8 354 aa16.25■□□□□ 0.19
CLIP1-216ENST00000541410 STK17AQ9UEE5 414 aa16.25■□□□□ 0.19
CLIP1-216ENST00000541410 CYP3A7-CYP3A51PA0A087WV96 503 aa16.24■□□□□ 0.19
CLIP1-216ENST00000541410 NKRFO15226 690 aaKnown RBP eCLIP16.24■□□□□ 0.19
CLIP1-216ENST00000541410 MSH4O15457 936 aa16.24■□□□□ 0.19
CLIP1-216ENST00000541410 ERCC3P19447 782 aa16.24■□□□□ 0.19
CLIP1-216ENST00000541410 CYP3A7P24462 503 aa16.24■□□□□ 0.19
CLIP1-216ENST00000541410 RPS12P25398 132 aaKnown RBP16.24■□□□□ 0.19
CLIP1-216ENST00000541410 MMP14P50281 582 aa16.24■□□□□ 0.19
CLIP1-216ENST00000541410 CYP4A11Q02928 519 aa16.24■□□□□ 0.19
CLIP1-216ENST00000541410 STIM1Q13586 685 aa16.24■□□□□ 0.19
CLIP1-216ENST00000541410 MTMR2Q13614 643 aa16.24■□□□□ 0.19
CLIP1-216ENST00000541410 ANKRD40Q6AI12 368 aa16.24■□□□□ 0.19
CLIP1-216ENST00000541410 ARHGAP27Q6ZUM4 889 aa16.24■□□□□ 0.19
CLIP1-216ENST00000541410 TC2NQ8N9U0 490 aa16.24■□□□□ 0.19
CLIP1-216ENST00000541410 SH2D4AQ9H788 454 aa16.24■□□□□ 0.19
CLIP1-216ENST00000541410 SYNPO2Q9UMS6 1093 aa16.24■□□□□ 0.19
CLIP1-216ENST00000541410 RBL2Q08999 1139 aa16.24■□□□□ 0.19
CLIP1-216ENST00000541410 PRKG1Q13976 671 aa16.24■□□□□ 0.19
CLIP1-216ENST00000541410 CCDC47Q96A33 483 aaKnown RBP16.24■□□□□ 0.19
CLIP1-216ENST00000541410 TANGO6Q9C0B7 1094 aa16.24■□□□□ 0.19
CLIP1-216ENST00000541410 POLD4Q9HCU8 107 aa16.24■□□□□ 0.19
CLIP1-216ENST00000541410 GCOM1H8Y6P7 765 aaPredicted RBP16.23■□□□□ 0.19
CLIP1-216ENST00000541410 FOSP01100 380 aaPredicted RBP16.23■□□□□ 0.19
CLIP1-216ENST00000541410 POLR2MP0CAP2 368 aa16.23■□□□□ 0.19
CLIP1-216ENST00000541410 COPB1P53618 953 aaKnown RBP16.23■□□□□ 0.19
CLIP1-216ENST00000541410 PSMC6P62333 389 aa16.23■□□□□ 0.19
CLIP1-216ENST00000541410 SPIRE1Q08AE8 756 aa16.23■□□□□ 0.19
CLIP1-216ENST00000541410 TTI2Q6NXR4 508 aa16.23■□□□□ 0.19
CLIP1-216ENST00000541410 MBOAT7Q96N66 472 aa16.23■□□□□ 0.19
CLIP1-216ENST00000541410 DUSP9Q99956 384 aaKnown RBP16.23■□□□□ 0.19
CLIP1-216ENST00000541410 CHMP2AO43633 222 aa16.23■□□□□ 0.19
CLIP1-216ENST00000541410 FILIP1LQ4L180 1135 aa16.23■□□□□ 0.19
CLIP1-216ENST00000541410 TMEM139Q8IV31 216 aa16.23■□□□□ 0.19
CLIP1-216ENST00000541410 CSGALNACT2Q8N6G5 542 aa16.23■□□□□ 0.19
CLIP1-216ENST00000541410 FEM1BQ9UK73 627 aa16.23■□□□□ 0.19
CLIP1-216ENST00000541410 CCPG1Q9ULG6 757 aa16.23■□□□□ 0.19
CLIP1-216ENST00000541410 H7C1D1 291 aa16.22■□□□□ 0.19
CLIP1-216ENST00000541410 SPP2Q13103 211 aa16.22■□□□□ 0.19
CLIP1-216ENST00000541410 CATSPER3Q86XQ3 398 aa16.22■□□□□ 0.19
CLIP1-216ENST00000541410 P2RX5Q93086 422 aa16.22■□□□□ 0.19
CLIP1-216ENST00000541410 HOOK2Q96ED9 719 aa16.22■□□□□ 0.19
CLIP1-216ENST00000541410 CTAGE1Q96RT6 745 aa16.22■□□□□ 0.19
CLIP1-216ENST00000541410 NAP1L4Q99733 375 aaKnown RBP16.22■□□□□ 0.19
CLIP1-216ENST00000541410 WDR18Q9BV38 432 aa16.22■□□□□ 0.19
CLIP1-216ENST00000541410 FGFBP2Q9BYJ0 223 aa16.22■□□□□ 0.19
CLIP1-216ENST00000541410 LIMA1Q9UHB6 759 aaKnown RBP16.22■□□□□ 0.19
CLIP1-216ENST00000541410 NFIBO00712 420 aa16.22■□□□□ 0.19
CLIP1-216ENST00000541410 EPS15P42566 896 aa16.22■□□□□ 0.19
CLIP1-216ENST00000541410 Q4G0T1 1027 aa16.22■□□□□ 0.19
CLIP1-216ENST00000541410 CNNM4Q6P4Q7 775 aa16.22■□□□□ 0.19
CLIP1-216ENST00000541410 UNC13DQ70J99 1090 aa16.22■□□□□ 0.19
CLIP1-216ENST00000541410 FAM160B2Q86V87 743 aa16.22■□□□□ 0.19
CLIP1-216ENST00000541410 SLFN12Q8IYM2 578 aa16.22■□□□□ 0.19
CLIP1-216ENST00000541410 BAG1Q99933 345 aaPredicted RBP16.22■□□□□ 0.19
CLIP1-216ENST00000541410 TMX1Q9H3N1 280 aa16.22■□□□□ 0.19
CLIP1-216ENST00000541410 SEMA6BQ9H3T3 888 aa16.22■□□□□ 0.19
CLIP1-216ENST00000541410 ZHX3Q9H4I2 956 aa16.22■□□□□ 0.19
CLIP1-216ENST00000541410 RAVER2Q9HCJ3 691 aaKnown RBP16.22■□□□□ 0.19
CLIP1-216ENST00000541410 ZNF536O15090 1300 aa16.22■□□□□ 0.19
CLIP1-216ENST00000541410 RNF225M0QZC1 329 aaPredicted RBP16.21■□□□□ 0.19
CLIP1-216ENST00000541410 PIK3CDO00329 1044 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 EML1O00423 815 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 FLOT1O75955 427 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 PLA2G4BP0C869 781 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 CASP14P31944 242 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms