RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 MRPS25P82663 173 aaKnown RBP14.61□□□□□ -0.07
HMGN1-216ENST00000486741 MB21D1Q8N884 522 aa14.61□□□□□ -0.07
HMGN1-216ENST00000486741 FKBP3Q00688 224 aaKnown RBP14.61□□□□□ -0.07
HMGN1-216ENST00000486741 DPYDQ12882 1025 aa14.61□□□□□ -0.07
HMGN1-216ENST00000486741 CCDC93Q567U6 631 aa14.61□□□□□ -0.07
HMGN1-216ENST00000486741 DHX37Q8IY37 1157 aaKnown RBP14.61□□□□□ -0.07
HMGN1-216ENST00000486741 FBXL16Q8N461 479 aa14.61□□□□□ -0.07
HMGN1-216ENST00000486741 RTFDC1Q9BY42 306 aaPredicted RBP14.61□□□□□ -0.07
HMGN1-216ENST00000486741 KCNQ5Q9NR82 932 aa14.61□□□□□ -0.07
HMGN1-216ENST00000486741 EMILIN3Q9NT22 766 aa14.61□□□□□ -0.07
HMGN1-216ENST00000486741 FOSP01100 380 aaPredicted RBP14.61□□□□□ -0.07
HMGN1-216ENST00000486741 CD44P16070 742 aaKnown RBP14.61□□□□□ -0.07
HMGN1-216ENST00000486741 STK4Q13043 487 aa14.61□□□□□ -0.07
HMGN1-216ENST00000486741 BIRC3Q13489 604 aa14.61□□□□□ -0.07
HMGN1-216ENST00000486741 IFI16Q16666 785 aaKnown RBP14.61□□□□□ -0.07
HMGN1-216ENST00000486741 KLHL7Q8IXQ5 586 aa14.61□□□□□ -0.07
HMGN1-216ENST00000486741 CCDC127Q96BQ5 260 aa14.61□□□□□ -0.07
HMGN1-216ENST00000486741 NOX5Q96PH1 765 aa14.61□□□□□ -0.07
HMGN1-216ENST00000486741 ZNF577Q9BSK1 485 aa14.61□□□□□ -0.07
HMGN1-216ENST00000486741 STK17AQ9UEE5 414 aa14.61□□□□□ -0.07
HMGN1-216ENST00000486741 TTC26A0AVF1 554 aa14.6□□□□□ -0.07
HMGN1-216ENST00000486741 POTEJP0CG39 1038 aa14.6□□□□□ -0.07
HMGN1-216ENST00000486741 ZNF543Q08ER8 600 aa14.6□□□□□ -0.07
HMGN1-216ENST00000486741 DPH6Q7L8W6 267 aa14.6□□□□□ -0.07
HMGN1-216ENST00000486741 SPZ1Q9BXG8 430 aa14.6□□□□□ -0.07
HMGN1-216ENST00000486741 ZNF341Q9BYN7 854 aa14.6□□□□□ -0.07
HMGN1-216ENST00000486741 NDST4Q9H3R1 872 aa14.6□□□□□ -0.07
HMGN1-216ENST00000486741 FAM208AQ9UK61 1670 aaKnown RBP14.6□□□□□ -0.07
HMGN1-216ENST00000486741 CCDC172P0C7W6 258 aa14.6□□□□□ -0.07
HMGN1-216ENST00000486741 ARHGAP4P98171 946 aa14.6□□□□□ -0.07
HMGN1-216ENST00000486741 TRIM31Q9BZY9 425 aa14.6□□□□□ -0.07
HMGN1-216ENST00000486741 RABEP2Q9H5N1 569 aa14.6□□□□□ -0.07
HMGN1-216ENST00000486741 VIRMAQ69YN4 1812 aaKnown RBP14.6□□□□□ -0.07
HMGN1-216ENST00000486741 NDUFA10O95299 355 aa14.6□□□□□ -0.07
HMGN1-216ENST00000486741 GCFC2P16383 781 aaKnown RBP14.6□□□□□ -0.07
HMGN1-216ENST00000486741 EIF2AK2P19525 551 aaKnown RBP14.6□□□□□ -0.07
HMGN1-216ENST00000486741 TNFAIP3P21580 790 aa14.6□□□□□ -0.07
HMGN1-216ENST00000486741 PPP4CP60510 307 aa14.6□□□□□ -0.07
HMGN1-216ENST00000486741 SH2D3AQ9BRG2 576 aa14.6□□□□□ -0.07
HMGN1-216ENST00000486741 HAUS4Q9H6D7 363 aa14.6□□□□□ -0.07
HMGN1-216ENST00000486741 KRT5P13647 590 aa14.59□□□□□ -0.07
HMGN1-216ENST00000486741 FAM102BQ5T8I3 360 aa14.59□□□□□ -0.07
HMGN1-216ENST00000486741 FBXO38Q6PIJ6 1188 aa14.59□□□□□ -0.07
HMGN1-216ENST00000486741 WDR24Q96S15 920 aa14.59□□□□□ -0.07
HMGN1-216ENST00000486741 TMOD4Q9NZQ9 345 aa14.59□□□□□ -0.07
HMGN1-216ENST00000486741 COL4A3BPQ9Y5P4 624 aa14.59□□□□□ -0.07
HMGN1-216ENST00000486741 CEP104O60308 925 aa14.59□□□□□ -0.07
HMGN1-216ENST00000486741 FXR1P51114 621 aaKnown RBP eCLIP14.59□□□□□ -0.07
HMGN1-216ENST00000486741 DDR1Q08345 913 aa14.59□□□□□ -0.07
HMGN1-216ENST00000486741 XKR9Q5GH70 373 aa14.59□□□□□ -0.07
HMGN1-216ENST00000486741 ARHGEF16Q5VV41 709 aa14.59□□□□□ -0.07
HMGN1-216ENST00000486741 TSGA10Q9BZW7 698 aa14.59□□□□□ -0.07
HMGN1-216ENST00000486741 TRIM9Q9C026 710 aa14.59□□□□□ -0.07
HMGN1-216ENST00000486741 PCIF1Q9H4Z3 704 aa14.59□□□□□ -0.07
HMGN1-216ENST00000486741 MAGEF1Q9HAY2 307 aa14.59□□□□□ -0.07
HMGN1-216ENST00000486741 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.59□□□□□ -0.07
HMGN1-216ENST00000486741 NPHP3-ACAD11A0A0J9YXS1 232 aa14.59□□□□□ -0.07
HMGN1-216ENST00000486741 KIAA0753Q2KHM9 967 aa14.59□□□□□ -0.07
HMGN1-216ENST00000486741 ANKRD40Q6AI12 368 aa14.59□□□□□ -0.07
HMGN1-216ENST00000486741 U2AF1L4Q8WU68 220 aaKnown RBP14.59□□□□□ -0.07
HMGN1-216ENST00000486741 PAGR1Q9BTK6 254 aa14.59□□□□□ -0.07
HMGN1-216ENST00000486741 SELENOOQ9BVL4 669 aa14.59□□□□□ -0.07
HMGN1-216ENST00000486741 K7ENM7 598 aa14.58□□□□□ -0.07
HMGN1-216ENST00000486741 TAL1P17542 331 aaPredicted RBP14.58□□□□□ -0.07
HMGN1-216ENST00000486741 MAN2A1Q16706 1144 aa14.58□□□□□ -0.07
HMGN1-216ENST00000486741 NLRX1Q86UT6 975 aa14.58□□□□□ -0.07
HMGN1-216ENST00000486741 CHP1Q99653 195 aa14.58□□□□□ -0.07
HMGN1-216ENST00000486741 TACC3Q9Y6A5 838 aa14.58□□□□□ -0.07
HMGN1-216ENST00000486741 A0A087X0B3 334 aa14.58□□□□□ -0.08
HMGN1-216ENST00000486741 GSTTP1A0A1W2PQM5 241 aa14.58□□□□□ -0.08
HMGN1-216ENST00000486741 EFCAB8A8MWE9 144 aa14.58□□□□□ -0.08
HMGN1-216ENST00000486741 EIF4A3P38919 411 aaKnown RBP14.58□□□□□ -0.08
HMGN1-216ENST00000486741 NCAPHQ15003 741 aa14.58□□□□□ -0.08
HMGN1-216ENST00000486741 ABHD10Q9NUJ1 306 aa14.58□□□□□ -0.08
HMGN1-216ENST00000486741 CDC23Q9UJX2 597 aa14.58□□□□□ -0.08
HMGN1-216ENST00000486741 SMAP1Q8IYB5 467 aaPredicted RBP14.58□□□□□ -0.08
HMGN1-216ENST00000486741 PANX2Q96RD6 677 aa14.58□□□□□ -0.08
HMGN1-216ENST00000486741 JMJD4Q9H9V9 463 aa14.58□□□□□ -0.08
HMGN1-216ENST00000486741 GINS2Q9Y248 185 aa14.58□□□□□ -0.08
HMGN1-216ENST00000486741 SMTNP53814 917 aa14.58□□□□□ -0.08
HMGN1-216ENST00000486741 TNFAIP1Q13829 316 aa14.58□□□□□ -0.08
HMGN1-216ENST00000486741 PAXIP1Q6ZW49 1069 aaPredicted RBP14.58□□□□□ -0.08
HMGN1-216ENST00000486741 HDXQ7Z353 690 aa14.58□□□□□ -0.08
HMGN1-216ENST00000486741 THAP9Q9H5L6 903 aa14.58□□□□□ -0.08
HMGN1-216ENST00000486741 NHEJ1Q9H9Q4 299 aaPredicted RBP14.58□□□□□ -0.08
HMGN1-216ENST00000486741 hCG_1984214I3L0E3 225 aa14.57□□□□□ -0.08
HMGN1-216ENST00000486741 NDUFB10O96000 172 aa14.57□□□□□ -0.08
HMGN1-216ENST00000486741 CAPN2P17655 700 aa14.57□□□□□ -0.08
HMGN1-216ENST00000486741 RCSD1Q6JBY9 416 aa14.57□□□□□ -0.08
HMGN1-216ENST00000486741 C8orf74Q6P047 294 aa14.57□□□□□ -0.08
HMGN1-216ENST00000486741 ARHGAP27Q6ZUM4 889 aa14.57□□□□□ -0.08
HMGN1-216ENST00000486741 ADAT2Q7Z6V5 191 aaKnown RBP14.57□□□□□ -0.08
HMGN1-216ENST00000486741 ZNF713Q8N859 430 aaPredicted RBP14.57□□□□□ -0.08
HMGN1-216ENST00000486741 FAM133AQ8N9E0 248 aa14.57□□□□□ -0.08
HMGN1-216ENST00000486741 HOOK2Q96ED9 719 aa14.57□□□□□ -0.08
HMGN1-216ENST00000486741 TEKT3Q9BXF9 490 aa14.57□□□□□ -0.08
HMGN1-216ENST00000486741 SRGAP2O75044 1071 aa14.57□□□□□ -0.08
HMGN1-216ENST00000486741 EXOC3L4Q17RC7 722 aa14.57□□□□□ -0.08
HMGN1-216ENST00000486741 UNC13DQ70J99 1090 aa14.57□□□□□ -0.08
HMGN1-216ENST00000486741 GPR161Q8N6U8 529 aaKnown RBP14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms