RNA–Protein interactions for RNA: ENST00000429440.5

CDC42BPA-206, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 2

Gene CDC42BPA, Length 2,501 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-206ENST00000429440 NAP1L3Q99457 506 aaPredicted RBP9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 USP44Q9H0E7 712 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 RAB17Q9H0T7 212 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 GDF3Q9NR23 364 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 CCDC87Q9NVE4 849 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 LRCH1Q9Y2L9 728 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 EIF4E1BA6NMX2 242 aaKnown RBP9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 WDR46O15213 610 aaKnown RBP9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 ALDH1L1O75891 902 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 NDUFA10O95299 355 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 GYPCP04921 128 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 RARAP10276 462 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 VDRP11473 427 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 RXRBP28702 533 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 MLH1P40692 756 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 EZH2Q15910 746 aaKnown RBP9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 GALNTL6Q49A17 601 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 HAUS3Q68CZ6 603 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 THOC7Q6I9Y2 204 aaKnown RBP9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 HOOK3Q86VS8 718 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 PRCCQ92733 491 aaPredicted RBP9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 GBP5Q96PP8 586 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 NRDE2Q9H7Z3 1164 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 PHAXQ9H814 394 aaKnown RBP9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 RNPEPL1Q9HAU8 725 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 ABHD10Q9NUJ1 306 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 ADD3Q9UEY8 706 aaKnown RBP9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 AGAP1Q9UPQ3 857 aa9.72□□□□□ -0.85
CDC42BPA-206ENST00000429440 SIPA1L3O60292 1781 aaPredicted RBP9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 RGPD5Q99666 1765 aa9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 PHF20L1A8MW92 1017 aa9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 IGF2BP3O00425 579 aaKnown RBP eCLIP9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 SEMA3EO15041 775 aa9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 P4HA2O15460 535 aa9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 TEX33O43247 280 aa9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 KCNQ3O43525 872 aa9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 HNRNPCP07910 306 aaKnown RBP eCLIP9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 KCNA4P22459 653 aa9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 ERCC5P28715 1186 aaPredicted RBP9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 EIF4A1P60842 406 aaKnown RBP9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 SLC44A4Q53GD3 710 aa9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 ERMARDQ5T6L9 678 aa9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 EIF1ADQ8N9N8 165 aaKnown RBP9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 CPLX3Q8WVH0 158 aa9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 DNAJC9Q8WXX5 260 aa9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 KLHL29Q96CT2 875 aa9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 CLMNQ96JQ2 1002 aa9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 IL1RAPL2Q9NP60 686 aa9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 REXO2Q9Y3B8 237 aaKnown RBP9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 CTDP1Q9Y5B0 961 aaPredicted RBP9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 STK24Q9Y6E0 443 aa9.71□□□□□ -0.85
CDC42BPA-206ENST00000429440 ADAMTS7Q9UKP4 1686 aa9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 KRT86O43790 486 aa9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 KRT16P08779 473 aa9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 BMP6P22004 513 aa9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 HSPA9P38646 679 aaKnown RBP9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 FXR1P51114 621 aaKnown RBP eCLIP9.71□□□□□ -0.865e-6■■■□□ 17.2
CDC42BPA-206ENST00000429440 NEK2P51955 445 aa9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 GSTM4Q03013 218 aa9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 PNOCQ13519 176 aa9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 COL9A3Q14050 684 aaPredicted RBP9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 KRT72Q14CN4 511 aa9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 MAP7D1Q3KQU3 841 aa9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 TRIML1Q8N9V2 468 aa9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 SSH3Q8TE77 659 aa9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 SH3TC2Q8TF17 1288 aa9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 TCEANC2Q96MN5 208 aa9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 CATSPER2Q96P56 530 aa9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 ZNF317Q96PQ6 595 aaPredicted RBP9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 TCHPQ9BT92 498 aa9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 SPATA16Q9BXB7 569 aa9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 KRT23Q9C075 422 aa9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 R3HDM2Q9Y2K5 976 aaKnown RBP9.71□□□□□ -0.86
CDC42BPA-206ENST00000429440 HTR3EA5X5Y0 456 aa9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 MAGEA13PA6NCF6 341 aa9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 RGL2O15211 777 aa9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 TRIM21P19474 475 aaKnown RBP9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 CCT6AP40227 531 aaKnown RBP9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 USP11P51784 963 aa9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 KRT83P78385 493 aa9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 GPSM2P81274 684 aa9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 MRPS25P82663 173 aaKnown RBP9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 CNPY1Q3B7I2 92 aa9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 CCDC122Q5T0U0 273 aa9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 NT5DC1Q5TFE4 455 aa9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 KLC3Q6P597 504 aa9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 ASRGL1Q7L266 308 aa9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 NANOGNBQ7Z5D8 188 aa9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 LONP2Q86WA8 852 aa9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 NME8Q8N427 588 aa9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 RNF10Q8N5U6 811 aaKnown RBP9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 ENDOVQ8N8Q3 282 aaKnown RBP9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 RBBP8NLQ8NC74 664 aaPredicted RBP9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 ASAP3Q8TDY4 903 aa9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 STK32AQ8WU08 396 aa9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 CTNNBL1Q8WYA6 563 aaPredicted RBP9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 MAML3Q96JK9 1138 aa9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 NR1H4Q96RI1 486 aaPredicted RBP9.7□□□□□ -0.86
CDC42BPA-206ENST00000429440 BHMT2Q9H2M3 363 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms