RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 HOMER1Q86YM7 354 aa7.35□□□□□ -1.23
USP54-202ENST00000413442 DHX37Q8IY37 1157 aaKnown RBP7.35□□□□□ -1.23
USP54-202ENST00000413442 TRIM22Q8IYM9 498 aa7.35□□□□□ -1.23
USP54-202ENST00000413442 C7orf61Q8IZ16 206 aa7.35□□□□□ -1.23
USP54-202ENST00000413442 RPUSD2Q8IZ73 545 aaKnown RBP7.35□□□□□ -1.23
USP54-202ENST00000413442 TBC1D5Q92609 795 aa7.35□□□□□ -1.23
USP54-202ENST00000413442 JAKMIP1Q96N16 626 aaKnown RBP7.35□□□□□ -1.23
USP54-202ENST00000413442 RNF26Q9BY78 433 aaPredicted RBP7.35□□□□□ -1.23
USP54-202ENST00000413442 BARHL2Q9NY43 387 aa7.35□□□□□ -1.23
USP54-202ENST00000413442 PCDH10Q9P2E7 1040 aa7.35□□□□□ -1.23
USP54-202ENST00000413442 DDX41Q9UJV9 622 aaKnown RBP7.35□□□□□ -1.23
USP54-202ENST00000413442 COLQQ9Y215 455 aaPredicted RBP7.35□□□□□ -1.23
USP54-202ENST00000413442 TAF6LQ9Y6J9 622 aa7.35□□□□□ -1.23
USP54-202ENST00000413442 LCTP09848 1927 aa7.35□□□□□ -1.23
USP54-202ENST00000413442 BAZ2BQ9UIF8 2168 aaKnown RBP7.35□□□□□ -1.23
USP54-202ENST00000413442 KLF18A0A0U1RQI7 1052 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 GOLGA8AA7E2F4 631 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 GOLGA8BA8MQT2 603 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 SPATA31C2B4DYI2 1134 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 MEIS2O14770 477 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 OPLAHO14841 1288 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 CTAGE5O15320 804 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 PPP1R11O60927 126 aaPredicted RBP7.34□□□□□ -1.23
USP54-202ENST00000413442 CDKL5O76039 1030 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 TIMP1P01033 207 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 CD4P01730 458 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 MYCNP04198 464 aaPredicted RBP7.34□□□□□ -1.23
USP54-202ENST00000413442 PFKMP08237 780 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 GNAT1P11488 350 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 RAG1P15918 1043 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 XBP1P17861 261 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 RFC2P35250 354 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 METAP2P50579 478 aaKnown RBP eCLIP7.34□□□□□ -1.23
USP54-202ENST00000413442 PURAQ00577 322 aaKnown RBP7.34□□□□□ -1.23
USP54-202ENST00000413442 TLE2Q04725 743 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 FAAP100Q0VG06 881 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 PFKFB3Q16875 520 aaPredicted RBP7.34□□□□□ -1.23
USP54-202ENST00000413442 RASGRP2Q7LDG7 609 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 NIPA1Q7RTP0 329 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 TDHQ8IZJ6 230 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 TMEM199Q8N511 208 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 CCDC155Q8N6L0 562 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 CCDC148Q8NFR7 591 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 OR6J1Q8NGC5 347 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 PPTC7Q8NI37 304 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 BRF1Q92994 677 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 GPRASP2Q96D09 838 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 INPP4AQ96PE3 977 aaPredicted RBP7.34□□□□□ -1.23
USP54-202ENST00000413442 UBE2OQ9C0C9 1292 aaKnown RBP7.34□□□□□ -1.23
USP54-202ENST00000413442 CPVLQ9H3G5 476 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 SENP2Q9HC62 589 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 C6orf50Q9HD87 102 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 RIC8AQ9NPQ8 531 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 PDGFCQ9NRA1 345 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 TMEM39AQ9NV64 488 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 ATP11BQ9Y2G3 1177 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 MRVI1Q9Y6F6 885 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 V9GY48 417 aaPredicted RBP7.34□□□□□ -1.23
USP54-202ENST00000413442 LRRC37A2A6NM11 1700 aa7.34□□□□□ -1.23
USP54-202ENST00000413442 PITPNM1O00562 1244 aa7.33□□□□□ -1.24
USP54-202ENST00000413442 HOXD8P13378 290 aaPredicted RBP7.33□□□□□ -1.24
USP54-202ENST00000413442 SCG2P13521 617 aa7.33□□□□□ -1.24
USP54-202ENST00000413442 EIF2AK2P19525 551 aaKnown RBP7.33□□□□□ -1.24
USP54-202ENST00000413442 PDIA3P30101 505 aaKnown RBP7.33□□□□□ -1.24
USP54-202ENST00000413442 ATN1P54259 1190 aaPredicted RBP7.33□□□□□ -1.24
USP54-202ENST00000413442 FUT2Q10981 343 aa7.33□□□□□ -1.24
USP54-202ENST00000413442 PPIGQ13427 754 aaKnown RBP eCLIP7.33□□□□□ -1.24
USP54-202ENST00000413442 BFSP2Q13515 415 aa7.33□□□□□ -1.24
USP54-202ENST00000413442 CELF3Q5SZQ8 465 aaKnown RBP7.33□□□□□ -1.24
USP54-202ENST00000413442 MYSM1Q5VVJ2 828 aa7.33□□□□□ -1.24
USP54-202ENST00000413442 ANO1Q5XXA6 986 aa7.33□□□□□ -1.24
USP54-202ENST00000413442 FAM109BQ6ICB4 259 aaPredicted RBP7.33□□□□□ -1.24
USP54-202ENST00000413442 MFSD5Q6N075 450 aa7.33□□□□□ -1.24
USP54-202ENST00000413442 CHRDL2Q6WN34 429 aa7.33□□□□□ -1.24
USP54-202ENST00000413442 EEPD1Q7L9B9 569 aa7.33□□□□□ -1.24
USP54-202ENST00000413442 FCHSD1Q86WN1 690 aa7.33□□□□□ -1.24
USP54-202ENST00000413442 MICU3Q86XE3 530 aa7.33□□□□□ -1.24
USP54-202ENST00000413442 FBXO16Q8IX29 292 aaPredicted RBP7.33□□□□□ -1.24
USP54-202ENST00000413442 FAM126BQ8IXS8 530 aa7.33□□□□□ -1.24
USP54-202ENST00000413442 WASF1Q92558 559 aa7.33□□□□□ -1.24
USP54-202ENST00000413442 FERMT2Q96AC1 680 aa7.33□□□□□ -1.24
USP54-202ENST00000413442 ZMYND12Q9H0C1 365 aa7.33□□□□□ -1.24
USP54-202ENST00000413442 MTIF3Q9H2K0 278 aaKnown RBP7.33□□□□□ -1.24
USP54-202ENST00000413442 MLXIPQ9HAP2 919 aa7.33□□□□□ -1.24
USP54-202ENST00000413442 BRPF3Q9ULD4 1205 aa7.33□□□□□ -1.24
USP54-202ENST00000413442 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.32□□□□□ -1.24
USP54-202ENST00000413442 SMCO2A6NFE2 343 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 CPLX1O14810 134 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 ADCY6O43306 1168 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 CAND2O75155 1236 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 PLEKHA8P1O95397 391 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 DEXIO95424 95 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 CYP3A4P08684 503 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 MYCLP12524 364 aaPredicted RBP7.32□□□□□ -1.24
USP54-202ENST00000413442 ADD1P35611 737 aaKnown RBP7.32□□□□□ -1.24
USP54-202ENST00000413442 MAGEA10P43363 369 aaPredicted RBP7.32□□□□□ -1.24
USP54-202ENST00000413442 SLC26A2P50443 739 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 USP11P51784 963 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 ADCY7P51828 1080 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 NAPAP54920 295 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms