RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 ZNF212Q9UDV6 495 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 NOP56O00567 594 aaKnown RBP6.66□□□□□ -1.34
CSMD1-201ENST00000335551 BUB1O43683 1085 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 SERPINB4P48594 390 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 LZICQ8WZA0 190 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 DYTNA2CJ06 578 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 GSNP06396 782 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 TAC1P20366 129 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 ANGPT1Q15389 498 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 CAPN12Q6ZSI9 719 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 MIGA1Q8NAN2 632 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 CHMP6Q96FZ7 201 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 THOC2Q8NI27 1593 aaKnown RBP6.66□□□□□ -1.34
CSMD1-201ENST00000335551 MYH3P11055 1940 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 TNNI1P19237 187 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 CEP85Q6P2H3 762 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 MYOCDQ8IZQ8 938 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 PANX2Q96RD6 677 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 NR1H4Q96RI1 486 aaPredicted RBP6.66□□□□□ -1.34
CSMD1-201ENST00000335551 KIF2CQ99661 725 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 BRIP1Q9BX63 1249 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 PPARGC1AQ9UBK2 798 aaKnown RBP6.66□□□□□ -1.34
CSMD1-201ENST00000335551 ADAM21Q9UKJ8 722 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 ARIH1Q9Y4X5 557 aaPredicted RBP6.66□□□□□ -1.34
CSMD1-201ENST00000335551 GRIN2AQ12879 1464 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 SLC27A2O14975 620 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 KRT7P08729 469 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 ST13P50502 369 aaKnown RBP6.66□□□□□ -1.34
CSMD1-201ENST00000335551 CCDC85BQ15834 202 aaPredicted RBP6.66□□□□□ -1.34
CSMD1-201ENST00000335551 DAB2IPQ5VWQ8 1189 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 RGS9BPQ6ZS82 235 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 CHST3Q7LGC8 479 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 MAGOHBQ96A72 148 aaKnown RBP6.66□□□□□ -1.34
CSMD1-201ENST00000335551 RAPGEF6Q8TEU7 1601 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 SPDYE16A6NNV3 312 aaPredicted RBP6.66□□□□□ -1.34
CSMD1-201ENST00000335551 GADD45BO75293 160 aaPredicted RBP6.66□□□□□ -1.34
CSMD1-201ENST00000335551 RPN1P04843 607 aaKnown RBP6.66□□□□□ -1.34
CSMD1-201ENST00000335551 HNRNPH2P55795 449 aaKnown RBP6.66□□□□□ -1.34
CSMD1-201ENST00000335551 KLC1Q07866 573 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 SPDYE2Q495Y8 402 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 SGO2Q562F6 1265 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 FBXO38Q6PIJ6 1188 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 NCAPG2Q86XI2 1143 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 SH3GL1Q99961 368 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 SMYD3Q9H7B4 428 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 LCMT1Q9UIC8 334 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 CAV1Q03135 178 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 MED21Q13503 144 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 CDR2LQ86X02 465 aaPredicted RBP6.66□□□□□ -1.34
CSMD1-201ENST00000335551 C19orf60Q96EN9 201 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 OTUB1Q96FW1 271 aaPredicted RBP6.66□□□□□ -1.34
CSMD1-201ENST00000335551 MAML3Q96JK9 1138 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 CDK13Q14004 1512 aaKnown RBP6.66□□□□□ -1.34
CSMD1-201ENST00000335551 LPXNO60711 386 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 TMCC1O94876 653 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 RAD23BP54727 409 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 TAF1BQ53T94 588 aaPredicted RBP6.66□□□□□ -1.34
CSMD1-201ENST00000335551 MPRIPQ6WCQ1 1025 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 PATL1Q86TB9 770 aaKnown RBP6.66□□□□□ -1.34
CSMD1-201ENST00000335551 TRMT44Q8IYL2 757 aaKnown RBP6.66□□□□□ -1.34
CSMD1-201ENST00000335551 CUEDC2Q9H467 287 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 STK17AQ9UEE5 414 aa6.66□□□□□ -1.34
CSMD1-201ENST00000335551 ZMYND8Q9ULU4 1186 aaPredicted RBP6.66□□□□□ -1.34
CSMD1-201ENST00000335551 UHRF1BP1Q6BDS2 1440 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 C16orf96A6NNT2 1141 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 KRT37O76014 449 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 SLC4A1P02730 911 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 DR1Q01658 176 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 DMP1Q13316 513 aaPredicted RBP6.65□□□□□ -1.34
CSMD1-201ENST00000335551 TBCCQ15814 346 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 NLRC4Q9NPP4 1024 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 TBC1D7Q9P0N9 293 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 PDP2Q9P2J9 529 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 LZTS1Q9Y250 596 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 RNF103-CHMP3A0A140T963 221 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 ZNF263O14978 683 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 ADAT2Q7Z6V5 191 aaKnown RBP6.65□□□□□ -1.34
CSMD1-201ENST00000335551 PCGF5Q86SE9 256 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 BTBD6Q96KE9 485 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 LRWD1Q9UFC0 647 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 PCDHB13Q9Y5F0 798 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 SYNGAP1Q96PV0 1343 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 A0A0G2JND7 137 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 LZTS3O60299 673 aaPredicted RBP6.65□□□□□ -1.34
CSMD1-201ENST00000335551 CA4P22748 312 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 TDRD7Q8NHU6 1098 aaKnown RBP6.65□□□□□ -1.34
CSMD1-201ENST00000335551 ASCC2Q9H1I8 757 aaPredicted RBP6.65□□□□□ -1.34
CSMD1-201ENST00000335551 KLHL31Q9H511 634 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 SYBUQ9NX95 663 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 CHPF2Q9P2E5 772 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 PNMA2Q9UL42 364 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 PLAAQ9Y263 795 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 NR1I2O75469 434 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 PUM3Q15397 648 aaKnown RBP6.65□□□□□ -1.34
CSMD1-201ENST00000335551 ECT2Q9H8V3 914 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 ARHGEF10LQ9HCE6 1279 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 CAPN9O14815 690 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 IL10P22301 178 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 IGBP1P78318 339 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 LAMB3Q13751 1172 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms