RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 SRGAP2O75044 1071 aa17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 MYBL2P10244 700 aa17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 LRRC41Q15345 812 aa17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 FAM163AQ96GL9 167 aaPredicted RBP17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 JMJD4Q9H9V9 463 aa17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 TBC1D7Q9P0N9 293 aa17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 KLRC4O43908 158 aa17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 SHMT1P34896 483 aa17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 PSEN1P49768 467 aa17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 CACNB1Q02641 598 aaPredicted RBP17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 STIM1Q13586 685 aa17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 MAGEC2Q9UBF1 373 aaPredicted RBP17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 AGPSO00116 658 aa17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 CRKP46108 304 aa17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 GALNT17Q6IS24 598 aa17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 APOBEC3HQ6NTF7 200 aaKnown RBP17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 DAGLBQ8NCG7 672 aa17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 CALML4Q96GE6 196 aa17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 PYM1Q9BRP8 204 aaKnown RBP17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 NAA15Q9BXJ9 866 aaKnown RBP17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 TRIM9Q9C026 710 aa17.28■□□□□ 0.36
SHROOM1-201ENST00000319854 THSD7AQ9UPZ6 1657 aa17.27■□□□□ 0.36
SHROOM1-201ENST00000319854 HLA-DOAP06340 250 aa17.27■□□□□ 0.36
SHROOM1-201ENST00000319854 USH1GQ495M9 461 aa17.27■□□□□ 0.36
SHROOM1-201ENST00000319854 KCNV1Q6PIU1 500 aa17.27■□□□□ 0.36
SHROOM1-201ENST00000319854 NAV1Q8NEY1 1877 aa17.27■□□□□ 0.36
SHROOM1-201ENST00000319854 MMS19Q96T76 1030 aa17.27■□□□□ 0.36
SHROOM1-201ENST00000319854 MMTAG2Q9BU76 263 aaKnown RBP17.27■□□□□ 0.36
SHROOM1-201ENST00000319854 KBTBD4Q9NVX7 518 aa17.27■□□□□ 0.36
SHROOM1-201ENST00000319854 DDTLA6NHG4 134 aaPredicted RBP17.27■□□□□ 0.35
SHROOM1-201ENST00000319854 USP14P54578 494 aa17.27■□□□□ 0.35
SHROOM1-201ENST00000319854 TUBB2AQ13885 445 aa17.27■□□□□ 0.35
SHROOM1-201ENST00000319854 ANKRD40Q6AI12 368 aa17.27■□□□□ 0.35
SHROOM1-201ENST00000319854 SPICE1Q8N0Z3 855 aa17.27■□□□□ 0.35
SHROOM1-201ENST00000319854 NLGN1Q8N2Q7 840 aa17.27■□□□□ 0.35
SHROOM1-201ENST00000319854 GLIS3Q8NEA6 775 aa17.27■□□□□ 0.35
SHROOM1-201ENST00000319854 SNX29Q8TEQ0 813 aa17.27■□□□□ 0.35
SHROOM1-201ENST00000319854 TUBB2BQ9BVA1 445 aa17.27■□□□□ 0.35
SHROOM1-201ENST00000319854 ERLIN2O94905 339 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 NPR1P16066 1061 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 MTIF2P46199 727 aaKnown RBP17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 SWT1Q5T5J6 900 aaKnown RBP17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 TMED8Q6PL24 325 aaPredicted RBP17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 POLD4Q9HCU8 107 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 ZNF831Q5JPB2 1677 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 DLEC1Q9Y238 1755 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 TTC26A0AVF1 554 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 MMP14P50281 582 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 GABPAQ06546 454 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 CNGA4Q8IV77 575 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 CCSER1Q9C0I3 900 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 ACBD3Q9H3P7 528 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 ZHX3Q9H4I2 956 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 RIOX1Q9H6W3 641 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 ABHD10Q9NUJ1 306 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 FAM169AQ9Y6X4 670 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 DDX60LQ5H9U9 1706 aaKnown RBP17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 HNRNPH1P31943 449 aaKnown RBP17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 ZNF543Q08ER8 600 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 KCNK18Q7Z418 384 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 C2CD5Q86YS7 1000 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 VIPAS39Q9H9C1 493 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 LIMA1Q9UHB6 759 aaKnown RBP17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 GUCA1BQ9UMX6 200 aa17.26■□□□□ 0.35
SHROOM1-201ENST00000319854 SLC1A4P43007 532 aa17.25■□□□□ 0.35
SHROOM1-201ENST00000319854 IRAK1P51617 712 aa17.25■□□□□ 0.35
SHROOM1-201ENST00000319854 CT47A1Q5JQC4 288 aaPredicted RBP17.25■□□□□ 0.35
SHROOM1-201ENST00000319854 TTC19Q6DKK2 380 aaPredicted RBP17.25■□□□□ 0.35
SHROOM1-201ENST00000319854 MYH1P12882 1939 aa17.25■□□□□ 0.35
SHROOM1-201ENST00000319854 TRIM21P19474 475 aaKnown RBP17.25■□□□□ 0.35
SHROOM1-201ENST00000319854 GSCP56915 257 aaPredicted RBP17.25■□□□□ 0.35
SHROOM1-201ENST00000319854 TUBB4BP68371 445 aa17.25■□□□□ 0.35
SHROOM1-201ENST00000319854 SEPT2Q15019 361 aa17.25■□□□□ 0.35
SHROOM1-201ENST00000319854 COG1Q8WTW3 980 aa17.25■□□□□ 0.35
SHROOM1-201ENST00000319854 TDRD3Q9H7E2 651 aaKnown RBP17.25■□□□□ 0.35
SHROOM1-201ENST00000319854 PSTPIP2Q9H939 334 aa17.25■□□□□ 0.35
SHROOM1-201ENST00000319854 REXO2Q9Y3B8 237 aaKnown RBP17.25■□□□□ 0.35
SHROOM1-201ENST00000319854 MAST2Q6P0Q8 1798 aa17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 H7C1D1 291 aa17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 EEF2P13639 858 aaKnown RBP17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 AOC3Q16853 763 aa17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 CAPZA3Q96KX2 299 aa17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 TUBGCP2Q9BSJ2 902 aa17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 DNAJC18Q9H819 358 aa17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 AGPAT5Q9NUQ2 364 aa17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 SCAF8Q9UPN6 1271 aaKnown RBP17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 LY75O60449 1722 aa17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 MYMKA6NI61 221 aa17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 SHOX2O60902 331 aaPredicted RBP17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 SPAG1Q07617 926 aa17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 ASPRV1Q53RT3 343 aa17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 GIMAP8Q8ND71 665 aaPredicted RBP17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 CCDC47Q96A33 483 aaKnown RBP17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 ALDH1B1P30837 517 aa17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 TBC1D8BQ0IIM8 1120 aa17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 GRB10Q13322 594 aa17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 SV2BQ7L1I2 683 aa17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 CEP89Q96ST8 783 aa17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 CXorf56Q9H5V9 222 aa17.24■□□□□ 0.35
SHROOM1-201ENST00000319854 KANSL2Q9H9L4 492 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms