RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 CLEC17AQ6ZS10 378 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 TBC1D10CQ8IV04 446 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 CCDC170Q8IYT3 715 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 PROCA1Q8NCQ7 364 aaPredicted RBP15.32■□□□□ 0.04
CPSF1-212ENST00000616140 VGLL3A8MV65 326 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 I3L4J1 428 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 LRRN2O75325 713 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 FTCDO95954 541 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 IFNAR2P48551 515 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 ARHGEF16Q5VV41 709 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 PANX2Q96RD6 677 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 SORBS3O60504 671 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 PRPF6O94906 941 aaKnown RBP15.31■□□□□ 0.04
CPSF1-212ENST00000616140 CYP2E1P05181 493 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-212ENST00000616140 HLFQ16534 295 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 FMR1NBQ8N0W7 255 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-212ENST00000616140 SYNE4Q8N205 404 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 GCFC2P16383 781 aaKnown RBP15.31■□□□□ 0.04
CPSF1-212ENST00000616140 EPHB4P54760 987 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 APBA1Q02410 837 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 SUSD4Q5VX71 490 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 FAM186BQ8IYM0 893 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 RSAD2Q8WXG1 361 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 GOLPH3LQ9H4A5 285 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 JRKLQ9Y4A0 524 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 TTLL3Q9Y4R7 772 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 MYO1FO00160 1098 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 CLIC2O15247 247 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 TBC1D10BQ4KMP7 808 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-212ENST00000616140 PALM2Q8IXS6 379 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 FAM133AQ8N9E0 248 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 P3H4Q92791 437 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 SUGCTQ9HAC7 445 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 ZNF148Q9UQR1 794 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 MEIS1O00470 390 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 DMTNQ08495 405 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 CCDC144BQ3MJ40 725 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 KRT26Q7Z3Y9 468 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 ANKARQ7Z5J8 1434 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 ARHGAP24Q8N264 748 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.31■□□□□ 0.04
CPSF1-212ENST00000616140 POMGNT1Q8WZA1 660 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 NDST4Q9H3R1 872 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 RAB20Q9NX57 234 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 TRPC6Q9Y210 931 aa15.31■□□□□ 0.04
CPSF1-212ENST00000616140 APBA3O96018 575 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 PNMA6AP0CW24 399 aaPredicted RBP15.3■□□□□ 0.04
CPSF1-212ENST00000616140 NSFP46459 744 aaKnown RBP15.3■□□□□ 0.04
CPSF1-212ENST00000616140 MECOMQ03112 1051 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 TAF12Q16514 161 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 TSNAXIP1Q2TAA8 658 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 KMT5BQ4FZB7 885 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 RESP18Q5W5W9 173 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 TAB3Q8N5C8 712 aaPredicted RBP15.3■□□□□ 0.04
CPSF1-212ENST00000616140 HOOK2Q96ED9 719 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 ZNF408Q9H9D4 720 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 NHEJ1Q9H9Q4 299 aaPredicted RBP15.3■□□□□ 0.04
CPSF1-212ENST00000616140 HNRNPDLO14979 420 aaKnown RBP15.3■□□□□ 0.04
CPSF1-212ENST00000616140 MFAP3LO75121 409 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 NAA30Q147X3 362 aaPredicted RBP15.3■□□□□ 0.04
CPSF1-212ENST00000616140 PSMD6Q15008 389 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 RILPQ96NA2 401 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 ADAMTS1Q9UHI8 967 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 CCPG1Q9ULG6 757 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 AXIN2Q9Y2T1 843 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 LRRIQ4A6NIV6 560 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 MOCS3O95396 460 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 AFPP02771 609 aaKnown RBP15.3■□□□□ 0.04
CPSF1-212ENST00000616140 GBP1P32455 592 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 C2orf54Q08AI8 447 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 AOC3Q16853 763 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 ARL6IP4Q66PJ3 421 aaKnown RBP15.3■□□□□ 0.04
CPSF1-212ENST00000616140 FAM196AQ6ZSG2 479 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 DISC1Q9NRI5 854 aa15.3■□□□□ 0.04
CPSF1-212ENST00000616140 TNFAIP1Q13829 316 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 BRDTQ58F21 947 aaPredicted RBP15.29■□□□□ 0.04
CPSF1-212ENST00000616140 CCDC13Q8IYE1 715 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 EMILIN3Q9NT22 766 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 DAAM1Q9Y4D1 1078 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 TROVE2P10155 538 aaKnown RBP eCLIP15.29■□□□□ 0.048e-9■■■■□ 22.1
CPSF1-212ENST00000616140 LMNB1P20700 586 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 FAM182BQ5T319 152 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 SCYL2Q6P3W7 929 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 PTPN22Q9Y2R2 807 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 KIF1BO60333 1816 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 PGRMC1O00264 195 aaKnown RBP15.29■□□□□ 0.04
CPSF1-212ENST00000616140 MAN1A1P33908 653 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 DMP1Q13316 513 aaPredicted RBP15.29■□□□□ 0.04
CPSF1-212ENST00000616140 CASP8Q14790 479 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 TCP11X2Q5H9J9 407 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 METTL13Q8N6R0 699 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 GRK7Q8WTQ7 553 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 CSRNP1Q96S65 589 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 KANSL2Q9H9L4 492 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 ODF2LQ9ULJ1 636 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 PASKQ96RG2 1323 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 PSMC2P35998 433 aaKnown RBP15.29■□□□□ 0.04
CPSF1-212ENST00000616140 RASSF2P50749 326 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 KIF11P52732 1056 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 PLTPP55058 493 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms