RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	CST9	Q5W186	159 aa		13.23	□□□□□ -0.29
VRK3-223	ENST00000601341	USP17L6P	Q6QN14	398 aa		13.23	□□□□□ -0.29
VRK3-223	ENST00000601341	CPXCR1	Q8N123	301 aa		13.23	□□□□□ -0.29
VRK3-223	ENST00000601341	AGBL1	Q96MI9	1066 aa		13.23	□□□□□ -0.29
VRK3-223	ENST00000601341	RAVER2	Q9HCJ3	691 aa	Known RBP	13.23	□□□□□ -0.29
VRK3-223	ENST00000601341	TMEM260	Q9NX78	707 aa		13.23	□□□□□ -0.29
VRK3-223	ENST00000601341	TUBE1	Q9UJT0	475 aa		13.23	□□□□□ -0.29
VRK3-223	ENST00000601341	PIK3CD	O00329	1044 aa		13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	MEIS2	O14770	477 aa		13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	OPLAH	O14841	1288 aa		13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	FOS	P01100	380 aa	Predicted RBP	13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	PABPC4	Q13310	644 aa	Known RBP eCLIP	13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	ZNF174	Q15697	407 aa		13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	NEK8	Q86SG6	692 aa		13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	LRRC8A	Q8IWT6	810 aa		13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	TBCK	Q8TEA7	893 aa		13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	AGTPBP1	Q9UPW5	1226 aa		13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	PAXBP1	Q9Y5B6	917 aa		13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	SPDYE16	A6NNV3	312 aa	Predicted RBP	13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	ATP2A1	O14983	1001 aa		13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	POLR2M	P0CAP2	368 aa		13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	PFKFB1	P16118	471 aa		13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	MARCKS	P29966	332 aa	Predicted RBP	13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	GJA5	P36382	358 aa		13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	SYK	P43405	635 aa		13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	IRX3	P78415	501 aa	Predicted RBP	13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	SYCP1	Q15431	976 aa		13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	RESP18	Q5W5W9	173 aa		13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	MCF2L2	Q86YR7	1114 aa		13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	WNK4	Q96J92	1243 aa		13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	HOOK1	Q9UJC3	728 aa	Known RBP	13.22	□□□□□ -0.29
VRK3-223	ENST00000601341	SPDYE3	A6NKU9	549 aa		13.21	□□□□□ -0.29
VRK3-223	ENST00000601341	CFB	P00751	764 aa		13.21	□□□□□ -0.29
VRK3-223	ENST00000601341	CETP	P11597	493 aa		13.21	□□□□□ -0.29
VRK3-223	ENST00000601341	ALAS1	P13196	640 aa		13.21	□□□□□ -0.29
VRK3-223	ENST00000601341	TAL1	P17542	331 aa	Predicted RBP	13.21	□□□□□ -0.29
VRK3-223	ENST00000601341	MCM7	P33993	719 aa		13.21	□□□□□ -0.29
VRK3-223	ENST00000601341	GTF2A2	P52657	109 aa		13.21	□□□□□ -0.29
VRK3-223	ENST00000601341	HUNK	P57058	714 aa		13.21	□□□□□ -0.29
VRK3-223	ENST00000601341	ORC2	Q13416	577 aa	Predicted RBP	13.21	□□□□□ -0.29
VRK3-223	ENST00000601341	MOGS	Q13724	837 aa		13.21	□□□□□ -0.29
VRK3-223	ENST00000601341	LETM2	Q2VYF4	491 aa		13.21	□□□□□ -0.29
VRK3-223	ENST00000601341	MB21D1	Q8N884	522 aa		13.21	□□□□□ -0.29
VRK3-223	ENST00000601341	KRI1	Q8N9T8	703 aa	Known RBP	13.21	□□□□□ -0.29
VRK3-223	ENST00000601341	ZNF579	Q8NAF0	562 aa	Known RBP	13.21	□□□□□ -0.29
VRK3-223	ENST00000601341	REPS2	Q8NFH8	660 aa		13.21	□□□□□ -0.29
VRK3-223	ENST00000601341	CACTIN	Q8WUQ7	758 aa	Known RBP	13.21	□□□□□ -0.29
VRK3-223	ENST00000601341	KIF2A	O00139	706 aa	Predicted RBP	13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	WNT7A	O00755	349 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	TUBB4A	P04350	444 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	ZBTB48	P10074	688 aa	Predicted RBP	13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	ATP2C1	P98194	919 aa	Predicted RBP	13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	PTGDR	Q13258	359 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	SAMD3	Q8N6K7	520 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	AOPEP	Q8N6M6	819 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	SMC1B	Q8NDV3	1235 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	NAP1L4	Q99733	375 aa	Known RBP	13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	TEX13B	Q9BXU2	312 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	ANO3	Q9BYT9	981 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	KIF3C	O14782	793 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	CTIF	O43310	598 aa	Known RBP	13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	CCNT1	O60563	726 aa	Known RBP	13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	OSBP	P22059	807 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	PTPRE	P23469	700 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	HOXA13	P31271	388 aa	Predicted RBP	13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	TMEM132B	Q14DG7	1078 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	TKFC	Q3LXA3	575 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	SPRYD7	Q5W111	196 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	LBX2	Q6XYB7	198 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	CCDC150	Q8NCX0	1101 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	CLEC4D	Q8WXI8	215 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	FERMT2	Q96AC1	680 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	TRERF1	Q96PN7	1200 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	P2RX7	Q99572	595 aa	Known RBP	13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	ASCC2	Q9H1I8	757 aa	Predicted RBP	13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	MAP3K20	Q9NYL2	800 aa	Known RBP	13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	NRBP1	Q9UHY1	535 aa		13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	ZNF214	Q9UL59	606 aa	Predicted RBP	13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	SRPRB	Q9Y5M8	271 aa	Known RBP	13.2	□□□□□ -0.3
VRK3-223	ENST00000601341	LAD1	O00515	517 aa		13.19	□□□□□ -0.3
VRK3-223	ENST00000601341	NRDC	O43847	1150 aa		13.19	□□□□□ -0.3
VRK3-223	ENST00000601341	STAT3	P40763	770 aa		13.19	□□□□□ -0.3
VRK3-223	ENST00000601341	USP11	P51784	963 aa		13.19	□□□□□ -0.3
VRK3-223	ENST00000601341	GHRHR	Q02643	423 aa		13.19	□□□□□ -0.3
VRK3-223	ENST00000601341	DPCR1	Q3MIW9	517 aa		13.19	□□□□□ -0.3
VRK3-223	ENST00000601341	CT47A1	Q5JQC4	288 aa	Predicted RBP	13.19	□□□□□ -0.3
VRK3-223	ENST00000601341	ARL6IP4	Q66PJ3	421 aa	Known RBP	13.19	□□□□□ -0.3
VRK3-223	ENST00000601341	SNRNP48	Q6IEG0	339 aa	Known RBP	13.19	□□□□□ -0.3
VRK3-223	ENST00000601341	PPP4R3A	Q6IN85	833 aa		13.19	□□□□□ -0.3
VRK3-223	ENST00000601341	GPAT2	Q6NUI2	795 aa		13.19	□□□□□ -0.3
VRK3-223	ENST00000601341	C17orf53	Q8N3J3	647 aa	Predicted RBP	13.19	□□□□□ -0.3
VRK3-223	ENST00000601341	MS4A4A	Q96JQ5	239 aa		13.19	□□□□□ -0.3
VRK3-223	ENST00000601341	PASK	Q96RG2	1323 aa		13.19	□□□□□ -0.3
VRK3-223	ENST00000601341	EHMT1	Q9H9B1	1298 aa		13.19	□□□□□ -0.3
VRK3-223	ENST00000601341	HOMER2	Q9NSB8	354 aa		13.19	□□□□□ -0.3
VRK3-223	ENST00000601341	FBXO2	Q9UK22	296 aa	Predicted RBP	13.19	□□□□□ -0.3
VRK3-223	ENST00000601341	NFIB	O00712	420 aa		13.18	□□□□□ -0.3
VRK3-223	ENST00000601341	GCFC2	P16383	781 aa	Known RBP	13.18	□□□□□ -0.3
VRK3-223	ENST00000601341	HSD17B4	P51659	736 aa		13.18	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms