RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 GPR20Q99678 358 aa5.61□□□□□ -1.51
VPS4B-203ENST00000588323 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.61□□□□□ -1.51
VPS4B-203ENST00000588323 SCAMP3O14828 347 aaKnown RBP5.6□□□□□ -1.51
VPS4B-203ENST00000588323 SMARCA5O60264 1052 aaPredicted RBP5.6□□□□□ -1.51
VPS4B-203ENST00000588323 INSRRP14616 1297 aa5.6□□□□□ -1.51
VPS4B-203ENST00000588323 HOMEZQ8IX15 550 aa5.6□□□□□ -1.51
VPS4B-203ENST00000588323 GPRASP2Q96D09 838 aa5.6□□□□□ -1.51
VPS4B-203ENST00000588323 LNPKQ9C0E8 428 aa5.6□□□□□ -1.51
VPS4B-203ENST00000588323 C7orf72A4D263 438 aa5.59□□□□□ -1.51
VPS4B-203ENST00000588323 FUCA1P04066 466 aa5.59□□□□□ -1.51
VPS4B-203ENST00000588323 NTRK1P04629 796 aa5.59□□□□□ -1.51
VPS4B-203ENST00000588323 CYP2C8P10632 490 aa5.59□□□□□ -1.51
VPS4B-203ENST00000588323 SMAD4Q13485 552 aaKnown RBP5.59□□□□□ -1.51
VPS4B-203ENST00000588323 DCP2Q8IU60 420 aaKnown RBP5.59□□□□□ -1.51
VPS4B-203ENST00000588323 CRACR2BQ8N4Y2 399 aaPredicted RBP5.59□□□□□ -1.51
VPS4B-203ENST00000588323 DDX11Q96FC9 970 aa5.59□□□□□ -1.51
VPS4B-203ENST00000588323 SPATA6Q9NWH7 488 aaPredicted RBP5.59□□□□□ -1.51
VPS4B-203ENST00000588323 CLEC1BQ9P126 229 aa5.59□□□□□ -1.51
VPS4B-203ENST00000588323 AKT3Q9Y243 479 aa5.59□□□□□ -1.51
VPS4B-203ENST00000588323 SIT1Q9Y3P8 196 aa5.59□□□□□ -1.51
VPS4B-203ENST00000588323 DUSP10Q9Y6W6 482 aa5.59□□□□□ -1.51
VPS4B-203ENST00000588323 ANKRD34BA5PLL1 514 aa5.58□□□□□ -1.52
VPS4B-203ENST00000588323 PUM1Q14671 1186 aaKnown RBP eCLIP5.58□□□□□ -1.52
VPS4B-203ENST00000588323 KIAA1211LQ6NV74 962 aa5.58□□□□□ -1.52
VPS4B-203ENST00000588323 VHLLQ6RSH7 139 aa5.58□□□□□ -1.52
VPS4B-203ENST00000588323 ZNF761Q86XN6 746 aaPredicted RBP5.58□□□□□ -1.52
VPS4B-203ENST00000588323 RASGRP4Q8TDF6 673 aa5.58□□□□□ -1.52
VPS4B-203ENST00000588323 CPLX3Q8WVH0 158 aa5.58□□□□□ -1.52
VPS4B-203ENST00000588323 AP5M1Q9H0R1 490 aa5.58□□□□□ -1.52
VPS4B-203ENST00000588323 TMPRSS5Q9H3S3 457 aa5.58□□□□□ -1.52
VPS4B-203ENST00000588323 RECKO95980 971 aa5.57□□□□□ -1.52
VPS4B-203ENST00000588323 PLS3P13797 630 aa5.57□□□□□ -1.52
VPS4B-203ENST00000588323 MAGEA10P43363 369 aaPredicted RBP5.57□□□□□ -1.52
VPS4B-203ENST00000588323 POMZP3Q6PJE2 187 aa5.57□□□□□ -1.52
VPS4B-203ENST00000588323 LINC00482Q8N8I6 264 aa5.57□□□□□ -1.52
VPS4B-203ENST00000588323 SHDQ96IW2 340 aa5.57□□□□□ -1.52
VPS4B-203ENST00000588323 PCDH18Q9HCL0 1135 aa5.57□□□□□ -1.52
VPS4B-203ENST00000588323 MARCH2Q9P0N8 246 aa5.57□□□□□ -1.52
VPS4B-203ENST00000588323 APEX2Q9UBZ4 518 aa5.57□□□□□ -1.52
VPS4B-203ENST00000588323 MYRFQ9Y2G1 1151 aa5.57□□□□□ -1.52
VPS4B-203ENST00000588323 KCNH1O95259 989 aa5.56□□□□□ -1.52
VPS4B-203ENST00000588323 ITGB3P05106 788 aa5.56□□□□□ -1.52
VPS4B-203ENST00000588323 C8BP07358 591 aa5.56□□□□□ -1.52
VPS4B-203ENST00000588323 NAT2P11245 290 aa5.56□□□□□ -1.52
VPS4B-203ENST00000588323 NASPP49321 788 aaPredicted RBP5.56□□□□□ -1.52
VPS4B-203ENST00000588323 SCRN1Q12765 414 aa5.56□□□□□ -1.52
VPS4B-203ENST00000588323 ETV3LQ6ZN32 361 aa5.56□□□□□ -1.52
VPS4B-203ENST00000588323 PLEKHO2Q8TD55 490 aa5.56□□□□□ -1.52
VPS4B-203ENST00000588323 ADAMTS17Q8TE56 1095 aa5.56□□□□□ -1.52
VPS4B-203ENST00000588323 MMP19Q99542 508 aa5.56□□□□□ -1.52
VPS4B-203ENST00000588323 GORASP1Q9BQQ3 440 aa5.56□□□□□ -1.52
VPS4B-203ENST00000588323 GPRC5CQ9NQ84 441 aa5.56□□□□□ -1.52
VPS4B-203ENST00000588323 SMPD4Q9NXE4 827 aa5.56□□□□□ -1.52
VPS4B-203ENST00000588323 BTG4Q9NY30 223 aa5.56□□□□□ -1.52
VPS4B-203ENST00000588323 EMC9Q9Y3B6 208 aa5.56□□□□□ -1.52
VPS4B-203ENST00000588323 NOP56O00567 594 aaKnown RBP5.55□□□□□ -1.52
VPS4B-203ENST00000588323 VAMP1P23763 118 aa5.55□□□□□ -1.52
VPS4B-203ENST00000588323 RGL3Q3MIN7 710 aa5.55□□□□□ -1.52
VPS4B-203ENST00000588323 MBLAC2Q68D91 279 aa5.55□□□□□ -1.52
VPS4B-203ENST00000588323 METTL16Q86W50 562 aaKnown RBP5.55□□□□□ -1.52
VPS4B-203ENST00000588323 ZNF513Q8N8E2 541 aaPredicted RBP5.55□□□□□ -1.52
VPS4B-203ENST00000588323 BVESQ8NE79 360 aa5.55□□□□□ -1.52
VPS4B-203ENST00000588323 COPS5Q92905 334 aa5.55□□□□□ -1.52
VPS4B-203ENST00000588323 PPP1R14AQ96A00 147 aa5.55□□□□□ -1.52
VPS4B-203ENST00000588323 APBA2Q99767 749 aa5.55□□□□□ -1.52
VPS4B-203ENST00000588323 C11orf84Q9BUA3 381 aaPredicted RBP5.55□□□□□ -1.52
VPS4B-203ENST00000588323 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.55□□□□□ -1.52
VPS4B-203ENST00000588323 ZBTB7CA1YPR0 619 aa5.54□□□□□ -1.52
VPS4B-203ENST00000588323 C22orf46C9J442 243 aa5.54□□□□□ -1.52
VPS4B-203ENST00000588323 THBDP07204 575 aa5.54□□□□□ -1.52
VPS4B-203ENST00000588323 RPL13P26373 211 aaKnown RBP5.54□□□□□ -1.52
VPS4B-203ENST00000588323 THBS2P35442 1172 aa5.54□□□□□ -1.52
VPS4B-203ENST00000588323 GJA8P48165 433 aa5.54□□□□□ -1.52
VPS4B-203ENST00000588323 CASP7P55210 303 aa5.54□□□□□ -1.52
VPS4B-203ENST00000588323 ADAM17P78536 824 aa5.54□□□□□ -1.52
VPS4B-203ENST00000588323 KIAA2012Q0VF49 1180 aa5.54□□□□□ -1.52
VPS4B-203ENST00000588323 CD300LDQ6UXZ3 194 aa5.54□□□□□ -1.52
VPS4B-203ENST00000588323 ZC3H18Q86VM9 953 aaKnown RBP5.54□□□□□ -1.52
VPS4B-203ENST00000588323 TEX2Q8IWB9 1127 aa5.54□□□□□ -1.52
VPS4B-203ENST00000588323 KYQ8NBH2 561 aa5.54□□□□□ -1.52
VPS4B-203ENST00000588323 SEC14L1Q92503 715 aa5.54□□□□□ -1.52
VPS4B-203ENST00000588323 DPF3Q92784 378 aa5.54□□□□□ -1.52
VPS4B-203ENST00000588323 SGSM2O43147 1006 aa5.53□□□□□ -1.52
VPS4B-203ENST00000588323 ZNF143P52747 638 aaPredicted RBP5.53□□□□□ -1.52
VPS4B-203ENST00000588323 MFAP1P55081 439 aaKnown RBP5.53□□□□□ -1.52
VPS4B-203ENST00000588323 FAM26FQ5R3K3 315 aa5.53□□□□□ -1.52
VPS4B-203ENST00000588323 GTF2IRD2BQ6EKJ0 949 aa5.53□□□□□ -1.52
VPS4B-203ENST00000588323 BORAQ6PGQ7 559 aa5.53□□□□□ -1.52
VPS4B-203ENST00000588323 GTF2IRD2Q86UP8 949 aa5.53□□□□□ -1.52
VPS4B-203ENST00000588323 FAM124AQ86V42 546 aa5.53□□□□□ -1.52
VPS4B-203ENST00000588323 NT5DC4Q86YG4 428 aa5.53□□□□□ -1.52
VPS4B-203ENST00000588323 MIB1Q86YT6 1006 aa5.53□□□□□ -1.52
VPS4B-203ENST00000588323 TTLL6Q8N841 843 aa5.53□□□□□ -1.52
VPS4B-203ENST00000588323 LOXL4Q96JB6 756 aa5.53□□□□□ -1.52
VPS4B-203ENST00000588323 RBM15Q96T37 977 aaKnown RBP eCLIP5.53□□□□□ -1.52
VPS4B-203ENST00000588323 PLATP00750 562 aa5.52□□□□□ -1.53
VPS4B-203ENST00000588323 RPL11P62913 178 aaKnown RBP5.52□□□□□ -1.53
VPS4B-203ENST00000588323 NCAPHQ15003 741 aa5.52□□□□□ -1.53
VPS4B-203ENST00000588323 INF2Q27J81 1249 aa5.52□□□□□ -1.53
VPS4B-203ENST00000588323 IQCEQ6IPM2 695 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms