RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 LDHDQ86WU2 507 aa7.32□□□□□ -1.24
VPS39-209ENST00000568029 C2CD5Q86YS7 1000 aa7.32□□□□□ -1.24
VPS39-209ENST00000568029 C12orf50Q8NA57 414 aaPredicted RBP7.32□□□□□ -1.24
VPS39-209ENST00000568029 KCT2Q8NC54 265 aa7.32□□□□□ -1.24
VPS39-209ENST00000568029 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.32□□□□□ -1.24
VPS39-209ENST00000568029 API5Q9BZZ5 524 aaKnown RBP7.32□□□□□ -1.24
VPS39-209ENST00000568029 WNT10AQ9GZT5 417 aa7.32□□□□□ -1.24
VPS39-209ENST00000568029 ABT1Q9ULW3 272 aaKnown RBP7.32□□□□□ -1.24
VPS39-209ENST00000568029 BCORQ6W2J9 1755 aa7.32□□□□□ -1.24
VPS39-209ENST00000568029 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.31□□□□□ -1.24
VPS39-209ENST00000568029 MEIS3P2A8K0S8 358 aa7.31□□□□□ -1.24
VPS39-209ENST00000568029 DCDC2CA8MYV0 355 aa7.31□□□□□ -1.24
VPS39-209ENST00000568029 CHL1O00533 1208 aa7.31□□□□□ -1.24
VPS39-209ENST00000568029 NTF4P34130 210 aa7.31□□□□□ -1.24
VPS39-209ENST00000568029 CAP2P40123 477 aa7.31□□□□□ -1.24
VPS39-209ENST00000568029 HDAC1Q13547 482 aaPredicted RBP7.31□□□□□ -1.24
VPS39-209ENST00000568029 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.31□□□□□ -1.24
VPS39-209ENST00000568029 SLC51AQ86UW1 340 aa7.31□□□□□ -1.24
VPS39-209ENST00000568029 AGGF1Q8N302 714 aaeCLIP7.31□□□□□ -1.24
VPS39-209ENST00000568029 OR6P1Q8NGX9 317 aa7.31□□□□□ -1.24
VPS39-209ENST00000568029 UBXN4Q92575 508 aa7.31□□□□□ -1.24
VPS39-209ENST00000568029 CAPNS2Q96L46 248 aa7.31□□□□□ -1.24
VPS39-209ENST00000568029 THUMPD2Q9BTF0 503 aaKnown RBP7.31□□□□□ -1.24
VPS39-209ENST00000568029 AP4E1Q9UPM8 1137 aa7.31□□□□□ -1.24
VPS39-209ENST00000568029 TNNQ9UQP3 1299 aa7.31□□□□□ -1.24
VPS39-209ENST00000568029 NOP58Q9Y2X3 529 aaKnown RBP7.31□□□□□ -1.24
VPS39-209ENST00000568029 PCDHB14Q9Y5E9 798 aa7.31□□□□□ -1.24
VPS39-209ENST00000568029 TRPM7Q96QT4 1865 aa7.3□□□□□ -1.24
VPS39-209ENST00000568029 KRBA1A5PL33 1030 aa7.3□□□□□ -1.24
VPS39-209ENST00000568029 TRAF5O00463 557 aa7.3□□□□□ -1.24
VPS39-209ENST00000568029 HTR3BO95264 441 aa7.3□□□□□ -1.24
VPS39-209ENST00000568029 MCM4P33991 863 aa7.3□□□□□ -1.24
VPS39-209ENST00000568029 MAP2K1Q02750 393 aaPredicted RBP7.3□□□□□ -1.24
VPS39-209ENST00000568029 INTS5Q6P9B9 1019 aaKnown RBP7.3□□□□□ -1.24
VPS39-209ENST00000568029 OLFM4Q6UX06 510 aa7.3□□□□□ -1.24
VPS39-209ENST00000568029 C12orf40Q86WS4 652 aa7.3□□□□□ -1.24
VPS39-209ENST00000568029 TMEM57Q8N5G2 664 aa7.3□□□□□ -1.24
VPS39-209ENST00000568029 TTLL6Q8N841 843 aa7.3□□□□□ -1.24
VPS39-209ENST00000568029 ZNF507Q8TCN5 953 aa7.3□□□□□ -1.24
VPS39-209ENST00000568029 SRRTQ9BXP5 876 aaKnown RBP7.3□□□□□ -1.24
VPS39-209ENST00000568029 ACTL7BQ9Y614 415 aa7.3□□□□□ -1.24
VPS39-209ENST00000568029 BRCA2P51587 3418 aa7.29□□□□□ -1.24
VPS39-209ENST00000568029 ELL2O00472 640 aaPredicted RBP7.29□□□□□ -1.24
VPS39-209ENST00000568029 SART1O43290 800 aaKnown RBP7.29□□□□□ -1.24
VPS39-209ENST00000568029 ALX3O95076 343 aa7.29□□□□□ -1.24
VPS39-209ENST00000568029 DRD2P14416 443 aa7.29□□□□□ -1.24
VPS39-209ENST00000568029 GLB1P16278 677 aa7.29□□□□□ -1.24
VPS39-209ENST00000568029 PREPP48147 710 aa7.29□□□□□ -1.24
VPS39-209ENST00000568029 IREB2P48200 963 aaKnown RBP7.29□□□□□ -1.24
VPS39-209ENST00000568029 GIPRP48546 466 aa7.29□□□□□ -1.24
VPS39-209ENST00000568029 CLCQ05315 142 aa7.29□□□□□ -1.24
VPS39-209ENST00000568029 DCTN1Q14203 1278 aa7.29□□□□□ -1.24
VPS39-209ENST00000568029 PPM1JQ5JR12 505 aa7.29□□□□□ -1.24
VPS39-209ENST00000568029 DYMQ7RTS9 669 aa7.29□□□□□ -1.24
VPS39-209ENST00000568029 C8orf58Q8NAV2 365 aa7.29□□□□□ -1.24
VPS39-209ENST00000568029 EZH1Q92800 747 aaPredicted RBP7.29□□□□□ -1.24
VPS39-209ENST00000568029 YIPF2Q9BWQ6 316 aa7.29□□□□□ -1.24
VPS39-209ENST00000568029 CHMP4AQ9BY43 222 aa7.29□□□□□ -1.24
VPS39-209ENST00000568029 ZBTB40Q9NUA8 1239 aa7.29□□□□□ -1.24
VPS39-209ENST00000568029 BABAM1Q9NWV8 329 aa7.29□□□□□ -1.24
VPS39-209ENST00000568029 PRAMEF27A3QJZ7 478 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 GNAT3A8MTJ3 354 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 SERPINB2P05120 415 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 SSBP05455 408 aaKnown RBP eCLIP7.28□□□□□ -1.24
VPS39-209ENST00000568029 GRK4P32298 578 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 ASPAP45381 313 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 RBL2Q08999 1139 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 MTHFSDQ2M296 383 aaKnown RBP7.28□□□□□ -1.24
VPS39-209ENST00000568029 SOGA3Q5TF21 947 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 CST9Q5W186 159 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 GK5Q6ZS86 529 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 MCM10Q7L590 875 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 CD163Q86VB7 1156 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 HID1Q8IV36 788 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 MRPL41Q8IXM3 137 aaKnown RBP7.28□□□□□ -1.24
VPS39-209ENST00000568029 CNTROBQ8N137 903 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 TAB3Q8N5C8 712 aaPredicted RBP7.28□□□□□ -1.24
VPS39-209ENST00000568029 TSPYL6Q8N831 410 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 SHDQ96IW2 340 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 MYRFLQ96LU7 910 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 GPR101Q96P66 508 aaPredicted RBP7.28□□□□□ -1.24
VPS39-209ENST00000568029 FERD3LQ96RJ6 166 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 UBL7Q96S82 380 aaPredicted RBP7.28□□□□□ -1.24
VPS39-209ENST00000568029 SSBP4Q9BWG4 385 aaPredicted RBP7.28□□□□□ -1.24
VPS39-209ENST00000568029 ACSS3Q9H6R3 686 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 PIDD1Q9HB75 910 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 FAM105AQ9NUU6 356 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 GMIPQ9P107 970 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 PPT2Q9UMR5 302 aa7.28□□□□□ -1.24
VPS39-209ENST00000568029 SOS1Q07889 1333 aaPredicted RBP7.27□□□□□ -1.24
VPS39-209ENST00000568029 HTTP42858 3142 aa7.27□□□□□ -1.25
VPS39-209ENST00000568029 GAS2O43903 313 aaKnown RBP7.27□□□□□ -1.25
VPS39-209ENST00000568029 PGRP06401 933 aa7.27□□□□□ -1.25
VPS39-209ENST00000568029 PLCG1P19174 1290 aa7.27□□□□□ -1.25
VPS39-209ENST00000568029 EPHX2P34913 555 aa7.27□□□□□ -1.25
VPS39-209ENST00000568029 EIF6P56537 245 aaKnown RBP7.27□□□□□ -1.25
VPS39-209ENST00000568029 ETF1P62495 437 aaKnown RBP7.27□□□□□ -1.25
VPS39-209ENST00000568029 TTLL4Q14679 1199 aa7.27□□□□□ -1.25
VPS39-209ENST00000568029 SKAP1Q86WV1 359 aa7.27□□□□□ -1.25
VPS39-209ENST00000568029 MCATQ8IVS2 390 aaKnown RBP7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms