RNA–Protein interactions for RNA: ENST00000497597.5

TRAPPC12-223, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 3,401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-223	ENST00000497597	NT5DC1	Q5TFE4	455 aa		11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	SPTY2D1	Q68D10	685 aa	Predicted RBP	11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	OTUD6A	Q7L8S5	288 aa		11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	DAAM2	Q86T65	1068 aa		11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	IFNL3	Q8IZI9	196 aa		11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	ZNF483	Q8TF39	744 aa	Predicted RBP	11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	SDR42E1	Q8WUS8	393 aa		11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	KCNK9	Q9NPC2	374 aa		11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	THRAP3	Q9Y2W1	955 aa	Known RBP	11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	NCAPD2	Q15021	1401 aa		11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	CYP2D7	A0A087X1C5	515 aa		11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	SEMA3E	O15041	775 aa		11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	DAPK3	O43293	454 aa		11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	MARCH6	O60337	910 aa		11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	TRIM37	O94972	964 aa		11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	HSD17B3	P37058	310 aa		11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	SSR1	P43307	286 aa	Known RBP	11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	SLC17A8	Q8NDX2	589 aa		11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	ATP6V0A4	Q9HBG4	840 aa		11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	NOP53	Q9NZM5	478 aa	Known RBP	11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	TRPC6	Q9Y210	931 aa		11.69	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	MYH13	Q9UKX3	1938 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	CCDC194	A0A1B0GVG4	234 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	SMIM22	K7EJ46	135 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	MCAM	P43121	646 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	PHKA1	P46020	1223 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	ELF3	P78545	371 aa	Predicted RBP	11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	LRRC41	Q15345	812 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	AKNAD1	Q5T1N1	836 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	IFIT1B	Q5T764	474 aa	Known RBP	11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	FAM47E	Q6ZV65	393 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	CATIP	Q7Z7H3	387 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	DZIP3	Q86Y13	1208 aa	Known RBP	11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	SPICE1	Q8N0Z3	855 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	FERMT2	Q96AC1	680 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	LRRC45	Q96CN5	670 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	SH2D4A	Q9H788	454 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	TBC1D7	Q9P0N9	293 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	XRN1	Q8IZH2	1706 aa	Known RBP	11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	MME	P08473	750 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	FCER1A	P12319	257 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	RANBP1	P43487	201 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	MAP3K12	Q12852	859 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	AGAP11	Q8TF27	550 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	A1CF	Q9NQ94	594 aa	Known RBP	11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	ADAMTS1	Q9UHI8	967 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	JCAD	Q9P266	1359 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	ABCC6	O95255	1503 aa		11.68	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	CPD	O75976	1380 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597		A8MUI8	341 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	RPS6KA1	Q15418	735 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	TBC1D5	Q92609	795 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	LUC7L	Q9NQ29	371 aa	Known RBP	11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	PANK4	Q9NVE7	773 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	ARHGAP20	Q9P2F6	1191 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	AMACR	Q9UHK6	382 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	SALL4	Q9UJQ4	1053 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	FAM237A	A0A1B0GTK4	181 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	KRIT1	O00522	736 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	EPHB6	O15197	1021 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	NKRF	O15226	690 aa	Known RBP eCLIP	11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	COPB2	P35606	906 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	ERF	P50548	548 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	LACTB	P83111	547 aa	Predicted RBP	11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	DTHD1	Q6ZMT9	781 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	IQCK	Q8N0W5	287 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	TBC1D22A	Q8WUA7	517 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	NUP58	Q9BVL2	599 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	CELF4	Q9BZC1	486 aa	Known RBP	11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	CNOT8	Q9UFF9	292 aa	Known RBP	11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	TNKS	O95271	1327 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	KRT13	P13646	458 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	KCNJ2	P63252	427 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	ITGB3BP	Q13352	177 aa	Predicted RBP	11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	IRF2BP1	Q8IU81	584 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	ZNF579	Q8NAF0	562 aa	Known RBP	11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	CDK5RAP3	Q96JB5	506 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	TSC22D3	Q99576	134 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	DNAJC7	Q99615	494 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	TLR10	Q9BXR5	811 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	KRT23	Q9C075	422 aa		11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	INTS9	Q9NV88	658 aa	Known RBP	11.67	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	POLR2F	P61218	127 aa	Known RBP	11.66	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	BZW1	Q7L1Q6	419 aa	Known RBP	11.66	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	LONP2	Q86WA8	852 aa		11.66	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	OSBPL1A	Q9BXW6	950 aa		11.66	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	TAF1D	Q9H5J8	278 aa	Predicted RBP	11.66	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	PHF8	Q9UPP1	1060 aa		11.66	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	GLE1	Q53GS7	698 aa	Known RBP	11.66	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	ANKRD40	Q6AI12	368 aa		11.66	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	PICK1	Q9NRD5	415 aa		11.66	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	UBR1	Q8IWV7	1749 aa		11.66	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	CCT8L1P	A6NM43	557 aa		11.66	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	EEF1G	P26641	437 aa	Known RBP	11.66	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	LTK	P29376	864 aa		11.66	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	ADD2	P35612	726 aa		11.66	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	IGHMBP2	P38935	993 aa	Known RBP	11.66	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	FOXO4	P98177	505 aa		11.66	□□□□□ -0.54
TRAPPC12-223	ENST00000497597	ANKLE2	Q86XL3	938 aa		11.66	□□□□□ -0.54

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