RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 STAT2P52630 851 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 EIF4A1P60842 406 aaKnown RBP14.31□□□□□ -0.12
COL6A3-212ENST00000491769 NEMP1O14524 444 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 NOP14P78316 857 aaKnown RBP14.31□□□□□ -0.12
COL6A3-212ENST00000491769 CCDC17Q96LX7 622 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 CARD6Q9BX69 1037 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 FANCBQ8NB91 859 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 FGD4Q96M96 766 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 TMEM106CQ9BVX2 250 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 DPH5Q9H2P9 285 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 PCIF1Q9H4Z3 704 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 GREM2Q9H772 168 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 TRAPPC8Q9Y2L5 1435 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 U2AF2P26368 475 aaKnown RBP eCLIP14.3□□□□□ -0.12
COL6A3-212ENST00000491769 TUBB2AQ13885 445 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 LRGUKQ96M69 825 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 TUBB2BQ9BVA1 445 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.3□□□□□ -0.12
COL6A3-212ENST00000491769 ZKSCAN5Q9Y2L8 839 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 MAP3K15Q6ZN16 1313 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 RECQLP46063 649 aaPredicted RBP14.3□□□□□ -0.12
COL6A3-212ENST00000491769 PSMD2Q13200 908 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 TSNAXIP1Q2TAA8 658 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 ZNF467Q7Z7K2 595 aaPredicted RBP14.3□□□□□ -0.12
COL6A3-212ENST00000491769 ACRBPQ8NEB7 543 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 UHMK1Q8TAS1 419 aaKnown RBP14.3□□□□□ -0.12
COL6A3-212ENST00000491769 NLRP4Q96MN2 994 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 PALD1Q9ULE6 856 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 SLC13A4Q9UKG4 626 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 MAP3K7O43318 606 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 HOXD10P28358 340 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 ARL4AP40617 200 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 LRRC24Q50LG9 513 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 TTLL6Q8N841 843 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 STK38LQ9Y2H1 464 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 EDC4Q6P2E9 1401 aaKnown RBP14.3□□□□□ -0.12
COL6A3-212ENST00000491769 DENND3A2RUS2 1198 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 DDAH1O94760 285 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 SPDL1Q96EA4 605 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 ABCC10Q5T3U5 1492 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 PSDA5PKW4 1024 aaPredicted RBP14.3□□□□□ -0.12
COL6A3-212ENST00000491769 ZBTB7BO15156 539 aaPredicted RBP14.3□□□□□ -0.12
COL6A3-212ENST00000491769 C21orf2O43822 256 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 RNF40O75150 1001 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 SCARA5Q6ZMJ2 495 aa14.3□□□□□ -0.12
COL6A3-212ENST00000491769 DDX41Q9UJV9 622 aaKnown RBP14.3□□□□□ -0.12
COL6A3-212ENST00000491769 RAPGEF6Q8TEU7 1601 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.29□□□□□ -0.12
COL6A3-212ENST00000491769 ASPHQ12797 758 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 OR6B2Q6IFH4 312 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 HMGB1P1B2RPK0 211 aaPredicted RBP14.29□□□□□ -0.12
COL6A3-212ENST00000491769 ZNF853P0CG23 659 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 BMP3P12645 472 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 RTKN2Q8IZC4 609 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 NDUFAF2Q8N183 169 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 PIM2Q9P1W9 311 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 PTPN22Q9Y2R2 807 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 SZRD1Q7Z422 152 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 SLC17A8Q8NDX2 589 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 ACCSQ96QU6 501 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.29□□□□□ -0.12
COL6A3-212ENST00000491769 SGSM2O43147 1006 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 ATP5JP18859 108 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 NFKBIAP25963 317 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 IFT122Q9HBG6 1241 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 METTL14Q9HCE5 456 aaKnown RBP14.29□□□□□ -0.12
COL6A3-212ENST00000491769 HACD3Q9P035 362 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 COL17A1Q9UMD9 1497 aaPredicted RBP14.29□□□□□ -0.12
COL6A3-212ENST00000491769 F8W8V4 182 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 GNGT2O14610 69 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 KCNQ3O43525 872 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 CTNNA1P35221 906 aaKnown RBP14.29□□□□□ -0.12
COL6A3-212ENST00000491769 ADKP55263 362 aaKnown RBP14.29□□□□□ -0.12
COL6A3-212ENST00000491769 DYNLT1P63172 113 aa14.29□□□□□ -0.12
COL6A3-212ENST00000491769 HEXIM2Q96MH2 286 aaKnown RBP14.29□□□□□ -0.12
COL6A3-212ENST00000491769 USP17L3A6NCW0 530 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 USP17L4A6NCW7 530 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 BPIFB4P59827 614 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 ASPRV1Q53RT3 343 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 FAM26FQ5R3K3 315 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 USP17L1Q7RTZ2 530 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 THEM5Q8N1Q8 247 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 PRPF38AQ8NAV1 312 aaKnown RBP14.28□□□□□ -0.12
COL6A3-212ENST00000491769 CDHR1Q96JP9 859 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 AOX1Q06278 1338 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 GSTA4O15217 222 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 BAG2O95816 211 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 PCCAP05165 728 aaPredicted RBP14.28□□□□□ -0.12
COL6A3-212ENST00000491769 PSAPP07602 524 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 CD58P19256 250 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 SYDE2Q5VT97 1194 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 GALNT17Q6IS24 598 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 RWDD4Q6NW29 188 aaKnown RBP14.28□□□□□ -0.12
COL6A3-212ENST00000491769 NOSTRINQ8IVI9 506 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 CBX8Q9HC52 389 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 RNF181Q9P0P0 153 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 ASAP1Q9ULH1 1129 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 YEATS2Q9ULM3 1422 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 STMN1P16949 149 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 MESDQ14696 234 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms