RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 PRDM6Q9NQX0 595 aa14.13□□□□□ -0.15
PTPRF-208ENST00000437607 PDGFCQ9NRA1 345 aa14.13□□□□□ -0.15
PTPRF-208ENST00000437607 K7ELQ4 463 aaPredicted RBP14.12□□□□□ -0.15
PTPRF-208ENST00000437607 FGRP09769 529 aa14.12□□□□□ -0.15
PTPRF-208ENST00000437607 ALAS1P13196 640 aa14.12□□□□□ -0.15
PTPRF-208ENST00000437607 SMPD1P17405 629 aa14.12□□□□□ -0.15
PTPRF-208ENST00000437607 SLC1A4P43007 532 aa14.12□□□□□ -0.15
PTPRF-208ENST00000437607 NOVP48745 357 aa14.12□□□□□ -0.15
PTPRF-208ENST00000437607 AK2P54819 239 aa14.12□□□□□ -0.15
PTPRF-208ENST00000437607 TKFCQ3LXA3 575 aa14.12□□□□□ -0.15
PTPRF-208ENST00000437607 RCSD1Q6JBY9 416 aa14.12□□□□□ -0.15
PTPRF-208ENST00000437607 CCDC174Q6PII3 467 aa14.12□□□□□ -0.15
PTPRF-208ENST00000437607 TLK2Q86UE8 772 aa14.12□□□□□ -0.15
PTPRF-208ENST00000437607 TMEM199Q8N511 208 aa14.12□□□□□ -0.15
PTPRF-208ENST00000437607 VWCEQ96DN2 955 aa14.12□□□□□ -0.15
PTPRF-208ENST00000437607 TMEM87BQ96K49 555 aa14.12□□□□□ -0.15
PTPRF-208ENST00000437607 PURBQ96QR8 312 aaKnown RBP14.12□□□□□ -0.15
PTPRF-208ENST00000437607 IL23AQ9NPF7 189 aa14.12□□□□□ -0.15
PTPRF-208ENST00000437607 CYP39A1Q9NYL5 469 aa14.12□□□□□ -0.15
PTPRF-208ENST00000437607 CXXC1Q9P0U4 656 aaPredicted RBP14.12□□□□□ -0.15
PTPRF-208ENST00000437607 PRR12Q9ULL5 1215 aa14.12□□□□□ -0.15
PTPRF-208ENST00000437607 ISY1Q9ULR0 285 aaKnown RBP14.12□□□□□ -0.15
PTPRF-208ENST00000437607 ASB14A6NK59 587 aa14.11□□□□□ -0.15
PTPRF-208ENST00000437607 TLR3O15455 904 aaKnown RBP14.11□□□□□ -0.15
PTPRF-208ENST00000437607 CD2BP2O95400 341 aaKnown RBP14.11□□□□□ -0.15
PTPRF-208ENST00000437607 ANTXR2P58335 489 aa14.11□□□□□ -0.15
PTPRF-208ENST00000437607 IKQ13123 557 aaPredicted RBP14.11□□□□□ -0.15
PTPRF-208ENST00000437607 FSCN1Q16658 493 aaKnown RBP14.11□□□□□ -0.15
PTPRF-208ENST00000437607 TMEM67Q5HYA8 995 aa14.11□□□□□ -0.15
PTPRF-208ENST00000437607 PSRC1Q6PGN9 363 aaPredicted RBP14.11□□□□□ -0.15
PTPRF-208ENST00000437607 Q6ZUG5 572 aa14.11□□□□□ -0.15
PTPRF-208ENST00000437607 CYB5R4Q7L1T6 521 aa14.11□□□□□ -0.15
PTPRF-208ENST00000437607 CHST3Q7LGC8 479 aa14.11□□□□□ -0.15
PTPRF-208ENST00000437607 FBXO16Q8IX29 292 aaPredicted RBP14.11□□□□□ -0.15
PTPRF-208ENST00000437607 MTA3Q9BTC8 594 aa14.11□□□□□ -0.15
PTPRF-208ENST00000437607 LRRC2Q9BYS8 371 aa14.11□□□□□ -0.15
PTPRF-208ENST00000437607 STX8Q9UNK0 236 aa14.11□□□□□ -0.15
PTPRF-208ENST00000437607 SH2B2O14492 632 aaPredicted RBP14.1□□□□□ -0.15
PTPRF-208ENST00000437607 IFIT3O14879 490 aaKnown RBP14.1□□□□□ -0.15
PTPRF-208ENST00000437607 DYNC1LI2O43237 492 aaPredicted RBP14.1□□□□□ -0.15
PTPRF-208ENST00000437607 ITGA7Q13683 1181 aa14.1□□□□□ -0.15
PTPRF-208ENST00000437607 EEPD1Q7L9B9 569 aa14.1□□□□□ -0.15
PTPRF-208ENST00000437607 MORC4Q8TE76 937 aa14.1□□□□□ -0.15
PTPRF-208ENST00000437607 HERVK_113Q902F9 699 aa14.1□□□□□ -0.15
PTPRF-208ENST00000437607 BRF1Q92994 677 aa14.1□□□□□ -0.15
PTPRF-208ENST00000437607 TRPV6Q9H1D0 765 aa14.1□□□□□ -0.15
PTPRF-208ENST00000437607 WNT8AQ9H1J5 351 aa14.1□□□□□ -0.15
PTPRF-208ENST00000437607 PRDM12Q9H4Q4 367 aa14.1□□□□□ -0.15
PTPRF-208ENST00000437607 TNKSO95271 1327 aa14.1□□□□□ -0.15
PTPRF-208ENST00000437607 PRRC2BQ5JSZ5 2229 aaKnown RBP14.1□□□□□ -0.15
PTPRF-208ENST00000437607 B4GALT4O60513 344 aa14.09□□□□□ -0.15
PTPRF-208ENST00000437607 CABYRO75952 493 aa14.09□□□□□ -0.15
PTPRF-208ENST00000437607 HSP90AA1P07900 732 aaKnown RBP14.09□□□□□ -0.15
PTPRF-208ENST00000437607 PSMC6P62333 389 aa14.09□□□□□ -0.15
PTPRF-208ENST00000437607 EXOSC10Q01780 885 aaKnown RBP14.09□□□□□ -0.15
PTPRF-208ENST00000437607 COL9A3Q14050 684 aaPredicted RBP14.09□□□□□ -0.15
PTPRF-208ENST00000437607 TOB2Q14106 344 aaPredicted RBP14.09□□□□□ -0.15
PTPRF-208ENST00000437607 ADGRE1Q14246 886 aa14.09□□□□□ -0.15
PTPRF-208ENST00000437607 WTAPQ15007 396 aa14.09□□□□□ -0.15
PTPRF-208ENST00000437607 CCDC178Q5BJE1 867 aa14.09□□□□□ -0.15
PTPRF-208ENST00000437607 TTBK2Q6IQ55 1244 aa14.09□□□□□ -0.15
PTPRF-208ENST00000437607 NFXL1Q6ZNB6 911 aa14.09□□□□□ -0.15
PTPRF-208ENST00000437607 NOC4LQ9BVI4 516 aaKnown RBP14.09□□□□□ -0.15
PTPRF-208ENST00000437607 AP5M1Q9H0R1 490 aa14.09□□□□□ -0.15
PTPRF-208ENST00000437607 ALDH8A1Q9H2A2 487 aaPredicted RBP14.09□□□□□ -0.15
PTPRF-208ENST00000437607 RANBP17Q9H2T7 1088 aaKnown RBP14.09□□□□□ -0.15
PTPRF-208ENST00000437607 HIPK3Q9H422 1215 aa14.09□□□□□ -0.15
PTPRF-208ENST00000437607 SH2B1Q9NRF2 756 aaPredicted RBP14.09□□□□□ -0.15
PTPRF-208ENST00000437607 ZSWIM5Q9P217 1185 aa14.09□□□□□ -0.15
PTPRF-208ENST00000437607 NAP1L2Q9ULW6 460 aaPredicted RBP14.09□□□□□ -0.15
PTPRF-208ENST00000437607 LIMCH1Q9UPQ0 1083 aa14.09□□□□□ -0.15
PTPRF-208ENST00000437607 CCDC69A6NI79 296 aa14.08□□□□□ -0.16
PTPRF-208ENST00000437607 GOLGA8BA8MQT2 603 aa14.08□□□□□ -0.16
PTPRF-208ENST00000437607 ICAM1P05362 532 aa14.08□□□□□ -0.16
PTPRF-208ENST00000437607 CCL23P55773 120 aa14.08□□□□□ -0.16
PTPRF-208ENST00000437607 TJAP1Q5JTD0 557 aa14.08□□□□□ -0.16
PTPRF-208ENST00000437607 PPP4R3BQ5MIZ7 849 aa14.08□□□□□ -0.16
PTPRF-208ENST00000437607 IQSEC1Q6DN90 963 aa14.08□□□□□ -0.16
PTPRF-208ENST00000437607 BTNL9Q6UXG8 535 aa14.08□□□□□ -0.16
PTPRF-208ENST00000437607 NSMFQ6X4W1 530 aa14.08□□□□□ -0.16
PTPRF-208ENST00000437607 SYMPKQ92797 1274 aaKnown RBP14.08□□□□□ -0.16
PTPRF-208ENST00000437607 ZSCAN31Q96LW9 406 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-208ENST00000437607 IPO9Q96P70 1041 aaKnown RBP14.08□□□□□ -0.16
PTPRF-208ENST00000437607 ZSCAN10Q96SZ4 725 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-208ENST00000437607 ZKSCAN3Q9BRR0 538 aa14.08□□□□□ -0.16
PTPRF-208ENST00000437607 AGXT2Q9BYV1 514 aa14.08□□□□□ -0.16
PTPRF-208ENST00000437607 NKX2-4Q9H2Z4 354 aa14.08□□□□□ -0.16
PTPRF-208ENST00000437607 CCPG1Q9ULG6 757 aa14.08□□□□□ -0.16
PTPRF-208ENST00000437607 MTMR7Q9Y216 660 aa14.08□□□□□ -0.16
PTPRF-208ENST00000437607 YBX2Q9Y2T7 364 aaKnown RBP14.08□□□□□ -0.16
PTPRF-208ENST00000437607 Q9Y3F1 56 aa14.08□□□□□ -0.16
PTPRF-208ENST00000437607 COL4A4P53420 1690 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-208ENST00000437607 KLF18A0A0U1RQI7 1052 aa14.07□□□□□ -0.16
PTPRF-208ENST00000437607 FGBP02675 491 aa14.07□□□□□ -0.16
PTPRF-208ENST00000437607 SLC16A2P36021 539 aa14.07□□□□□ -0.16
PTPRF-208ENST00000437607 BAATQ14032 418 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-208ENST00000437607 IFIT1BQ5T764 474 aaKnown RBP14.07□□□□□ -0.16
PTPRF-208ENST00000437607 OTOP2Q7RTS6 562 aa14.07□□□□□ -0.16
PTPRF-208ENST00000437607 FBXL16Q8N461 479 aa14.07□□□□□ -0.16
PTPRF-208ENST00000437607 DCAF4Q8WV16 495 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms