RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 RESP18Q5W5W9 173 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 ARL6IP4Q66PJ3 421 aaKnown RBP6.77□□□□□ -1.33
HMGB3-202ENST00000419110 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.77□□□□□ -1.33
HMGB3-202ENST00000419110 PRPF38AQ8NAV1 312 aaKnown RBP6.77□□□□□ -1.33
HMGB3-202ENST00000419110 PROCA1Q8NCQ7 364 aaPredicted RBP6.77□□□□□ -1.33
HMGB3-202ENST00000419110 RASSF8Q8NHQ8 419 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 TBCKQ8TEA7 893 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 DDX27Q96GQ7 796 aaKnown RBP6.77□□□□□ -1.33
HMGB3-202ENST00000419110 PGBD1Q96JS3 809 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 RAB34Q9BZG1 259 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 ZNF408Q9H9D4 720 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 ELP3Q9H9T3 547 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 FBXO28Q9NVF7 368 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 DACT1Q9NYF0 836 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 HOOK1Q9UJC3 728 aaKnown RBP6.77□□□□□ -1.33
HMGB3-202ENST00000419110 FBXO2Q9UK22 296 aaPredicted RBP6.77□□□□□ -1.33
HMGB3-202ENST00000419110 PCDHA7Q9UN72 937 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 FZD1Q9UP38 647 aa6.77□□□□□ -1.33
HMGB3-202ENST00000419110 A0A0G2JLL6 359 aaPredicted RBP6.76□□□□□ -1.33
HMGB3-202ENST00000419110 SYCE3A1L190 88 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 GOLGA6L3A6NEY3 463 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 UNCXA6NJT0 531 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 USP17L15C9J2P7 530 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 USP17L13C9JLJ4 530 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 USP17L11C9JVI0 530 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 USP17L18D6R9N7 530 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 USP17L22D6RA61 530 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 USP17L17D6RBQ6 530 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 USP17L19D6RCP7 530 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 USP17L20D6RJB6 530 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 GCOM1H8Y6P7 765 aaPredicted RBP6.76□□□□□ -1.33
HMGB3-202ENST00000419110 PIK3CDO00329 1044 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 CCNT1O60563 726 aaKnown RBP6.76□□□□□ -1.33
HMGB3-202ENST00000419110 USP2O75604 605 aaPredicted RBP6.76□□□□□ -1.33
HMGB3-202ENST00000419110 POLR2MP0CAP2 368 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 PTPREP23469 700 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 CMA1P23946 247 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 PRPHP41219 470 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 SYKP43405 635 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 CLK2P49760 499 aaKnown RBP6.76□□□□□ -1.33
HMGB3-202ENST00000419110 OAZ1P54368 228 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 SNAP25P60880 206 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 USP17L24Q0WX57 530 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 ZNF174Q15697 407 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 CALCRLQ16602 461 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 NOM1Q5C9Z4 860 aaKnown RBP6.76□□□□□ -1.33
HMGB3-202ENST00000419110 SH3D19Q5HYK7 790 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 L1TD1Q5T7N2 865 aaKnown RBP6.76□□□□□ -1.33
HMGB3-202ENST00000419110 MAP1SQ66K74 1059 aaPredicted RBP6.76□□□□□ -1.33
HMGB3-202ENST00000419110 MOXD1Q6UVY6 613 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 GADL1Q6ZQY3 521 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 PRRT2Q7Z6L0 340 aaPredicted RBP6.76□□□□□ -1.33
HMGB3-202ENST00000419110 MCF2L2Q86YR7 1114 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 ATG4CQ96DT6 458 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 TSPY26PQ9H489 355 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 GOLPH3LQ9H4A5 285 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 SLC38A10Q9HBR0 1119 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 EMILIN3Q9NT22 766 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 TMEM260Q9NX78 707 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.76□□□□□ -1.33
HMGB3-202ENST00000419110 BIN2Q9UBW5 565 aaPredicted RBP6.76□□□□□ -1.33
HMGB3-202ENST00000419110 PNMA3Q9UL41 463 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 RABGAP1Q9Y3P9 1069 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 AFG3L2Q9Y4W6 797 aa6.76□□□□□ -1.33
HMGB3-202ENST00000419110 SRPRBQ9Y5M8 271 aaKnown RBP6.76□□□□□ -1.33
HMGB3-202ENST00000419110 CASP8AP2Q9UKL3 1982 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 FAM237AA0A1B0GTK4 181 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 A0A1B0GVL5 298 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 VWA3AA6NCI4 1184 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 SPDYE16A6NNV3 312 aaPredicted RBP6.75□□□□□ -1.33
HMGB3-202ENST00000419110 CXCL11O14625 94 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 MARCH6O60337 910 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 EVI5O60447 810 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 NR1I2O75469 434 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 CFBP00751 764 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 CCDC192P0DO97 292 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 ALAS1P13196 640 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 TAL1P17542 331 aaPredicted RBP6.75□□□□□ -1.33
HMGB3-202ENST00000419110 COPB2P35606 906 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 LONP1P36776 959 aaKnown RBP6.75□□□□□ -1.33
HMGB3-202ENST00000419110 SREBF1P36956 1147 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 SETQ01105 290 aaPredicted RBP6.75□□□□□ -1.33
HMGB3-202ENST00000419110 PTGDRQ13258 359 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 DGKZQ13574 1117 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 TKFCQ3LXA3 575 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 AXDND1Q5T1B0 1012 aaPredicted RBP6.75□□□□□ -1.33
HMGB3-202ENST00000419110 SNRNP48Q6IEG0 339 aaKnown RBP6.75□□□□□ -1.33
HMGB3-202ENST00000419110 LRSAM1Q6UWE0 723 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 DTHD1Q6ZMT9 781 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 SAMD3Q8N6K7 520 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 MB21D1Q8N884 522 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 GTF3C2Q8WUA4 911 aaPredicted RBP6.75□□□□□ -1.33
HMGB3-202ENST00000419110 OPTNQ96CV9 577 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 CLMNQ96JQ2 1002 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 TEX13BQ9BXU2 312 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 GBA2Q9HCG7 927 aaPredicted RBP6.75□□□□□ -1.33
HMGB3-202ENST00000419110 RNF146Q9NTX7 359 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 PLA2G2EQ9NZK7 142 aa6.75□□□□□ -1.33
HMGB3-202ENST00000419110 DDX25Q9UHL0 483 aaKnown RBP6.75□□□□□ -1.33
HMGB3-202ENST00000419110 USP25Q9UHP3 1055 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms