RNA–Protein interactions for RNA: ENST00000575176.5

SMG6-216, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 557 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-216ENST00000575176 PLEKHD1A6NEE1 506 aa14.12□□□□□ -0.15
SMG6-216ENST00000575176 POGZQ7Z3K3 1410 aa14.12□□□□□ -0.15
SMG6-216ENST00000575176 ARHGEF12Q9NZN5 1544 aa14.11□□□□□ -0.15
SMG6-216ENST00000575176 ADGRL1O94910 1474 aa14.1□□□□□ -0.15
SMG6-216ENST00000575176 MAP3K1Q13233 1512 aa14.1□□□□□ -0.15
SMG6-216ENST00000575176 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.09□□□□□ -0.15
SMG6-216ENST00000575176 HNRNPUL2Q1KMD3 747 aaKnown RBP14.09□□□□□ -0.15
SMG6-216ENST00000575176 ARHGAP5Q13017 1502 aa14.09□□□□□ -0.15
SMG6-216ENST00000575176 GPATCH8Q9UKJ3 1502 aaKnown RBP14.09□□□□□ -0.15
SMG6-216ENST00000575176 SUPT6HQ7KZ85 1726 aaKnown RBP14.08□□□□□ -0.16
SMG6-216ENST00000575176 ABCA6Q8N139 1617 aa14.08□□□□□ -0.16
SMG6-216ENST00000575176 ADAMTSL3P82987 1691 aa14.07□□□□□ -0.16
SMG6-216ENST00000575176 DENND4BO75064 1496 aaPredicted RBP14.07□□□□□ -0.16
SMG6-216ENST00000575176 BCORL1Q5H9F3 1711 aa14.07□□□□□ -0.16
SMG6-216ENST00000575176 HECW2Q9P2P5 1572 aa14.06□□□□□ -0.16
SMG6-216ENST00000575176 KIDINS220Q9ULH0 1771 aa14.06□□□□□ -0.16
SMG6-216ENST00000575176 INO80Q9ULG1 1556 aaPredicted RBP14.05□□□□□ -0.16
SMG6-216ENST00000575176 DIP2CQ9Y2E4 1556 aa14.05□□□□□ -0.16
SMG6-216ENST00000575176 ZFYVE16Q7Z3T8 1539 aa14.05□□□□□ -0.16
SMG6-216ENST00000575176 SYCP2Q9BX26 1530 aa14.05□□□□□ -0.16
SMG6-216ENST00000575176 YEATS2Q9ULM3 1422 aa14.04□□□□□ -0.16
SMG6-216ENST00000575176 LRRC9Q6ZRR7 1453 aa14.04□□□□□ -0.16
SMG6-216ENST00000575176 RAPGEF3O95398 923 aa14.03□□□□□ -0.16
SMG6-216ENST00000575176 REREQ9P2R6 1566 aa14.03□□□□□ -0.16
SMG6-216ENST00000575176 NCOA2Q15596 1464 aa14.02□□□□□ -0.16
SMG6-216ENST00000575176 ZNF518AQ6AHZ1 1483 aa14.02□□□□□ -0.16
SMG6-216ENST00000575176 SCAPERQ9BY12 1400 aa14.02□□□□□ -0.16
SMG6-216ENST00000575176 KDM4FA0A1W2PPD8 638 aa14.02□□□□□ -0.17
SMG6-216ENST00000575176 ATP1B4Q9UN42 357 aaPredicted RBP14.02□□□□□ -0.17
SMG6-216ENST00000575176 MAGI2Q86UL8 1455 aa14.01□□□□□ -0.17
SMG6-216ENST00000575176 CDK11AQ9UQ88 783 aaPredicted RBP14.01□□□□□ -0.17
SMG6-216ENST00000575176 MADDQ8WXG6 1647 aa14.01□□□□□ -0.17
SMG6-216ENST00000575176 TRAPPC8Q9Y2L5 1435 aa14□□□□□ -0.17
SMG6-216ENST00000575176 MTUS2Q5JR59 1369 aa13.98□□□□□ -0.17
SMG6-216ENST00000575176 PLXNC1O60486 1568 aa13.98□□□□□ -0.17
SMG6-216ENST00000575176 MLH3Q9UHC1 1453 aa13.98□□□□□ -0.17
SMG6-216ENST00000575176 ADGBQ8N7X0 1667 aa13.98□□□□□ -0.17
SMG6-216ENST00000575176 MBD5Q9P267 1494 aa13.97□□□□□ -0.17
SMG6-216ENST00000575176 CROCC2H7BZ55 1655 aa13.95□□□□□ -0.18
SMG6-216ENST00000575176 FER1L4A9Z1Z3 1794 aa13.95□□□□□ -0.18
SMG6-216ENST00000575176 KIAA1107Q9UPP5 1409 aa13.95□□□□□ -0.18
SMG6-216ENST00000575176 CAMSAP2Q08AD1 1489 aa13.94□□□□□ -0.18
SMG6-216ENST00000575176 ARHGEF5Q12774 1597 aa13.94□□□□□ -0.18
SMG6-216ENST00000575176 EFCAB2Q5VUJ9 269 aa13.94□□□□□ -0.18
SMG6-216ENST00000575176 RIMS1Q86UR5 1692 aaKnown RBP13.94□□□□□ -0.18
SMG6-216ENST00000575176 ATP7AQ04656 1500 aa13.94□□□□□ -0.18
SMG6-216ENST00000575176 C9orf84Q5VXU9 1444 aa13.92□□□□□ -0.18
SMG6-216ENST00000575176 CCNB3Q8WWL7 1395 aa13.92□□□□□ -0.18
SMG6-216ENST00000575176 PLEKHH2Q8IVE3 1493 aa13.92□□□□□ -0.18
SMG6-216ENST00000575176 AGLP35573 1532 aa13.91□□□□□ -0.18
SMG6-216ENST00000575176 KANK4Q5T7N3 995 aaPredicted RBP13.91□□□□□ -0.18
SMG6-216ENST00000575176 ATP10AO60312 1499 aa13.91□□□□□ -0.18
SMG6-216ENST00000575176 MAST1Q9Y2H9 1570 aa13.9□□□□□ -0.18
SMG6-216ENST00000575176 AFAP1Q8N556 730 aa13.88□□□□□ -0.19
SMG6-216ENST00000575176 MYOM3Q5VTT5 1437 aa13.88□□□□□ -0.19
SMG6-216ENST00000575176 PTPN23Q9H3S7 1636 aa13.87□□□□□ -0.19
SMG6-216ENST00000575176 ZNF644Q9H582 1327 aaPredicted RBP13.87□□□□□ -0.19
SMG6-216ENST00000575176 PTPRMP28827 1452 aa13.87□□□□□ -0.19
SMG6-216ENST00000575176 CCDC141Q6ZP82 1450 aa13.86□□□□□ -0.19
SMG6-216ENST00000575176 DNMT1P26358 1616 aaKnown RBP13.85□□□□□ -0.19
SMG6-216ENST00000575176 TCOF1Q13428 1488 aaKnown RBP13.85□□□□□ -0.19
SMG6-216ENST00000575176 MIA2Q96PC5 1412 aa13.84□□□□□ -0.19
SMG6-216ENST00000575176 MROH2AA6NES4 1674 aa13.84□□□□□ -0.19
SMG6-216ENST00000575176 C3P01024 1663 aa13.84□□□□□ -0.19
SMG6-216ENST00000575176 CFDP1Q9UEE9 299 aaPredicted RBP13.82□□□□□ -0.2
SMG6-216ENST00000575176 MROH1Q8NDA8 1641 aa13.82□□□□□ -0.2
SMG6-216ENST00000575176 RNF17Q9BXT8 1623 aaKnown RBP13.81□□□□□ -0.2
SMG6-216ENST00000575176 RTEL1-TNFRSF6BF6WH68 1400 aa13.81□□□□□ -0.2
SMG6-216ENST00000575176 FGD6Q6ZV73 1430 aa13.81□□□□□ -0.2
SMG6-216ENST00000575176 HNRNPMP52272 730 aaKnown RBP eCLIP13.8□□□□□ -0.2
SMG6-216ENST00000575176 SHANK2Q9UPX8 1470 aa13.8□□□□□ -0.2
SMG6-216ENST00000575176 EIF2AK4Q9P2K8 1649 aaKnown RBP13.79□□□□□ -0.2
SMG6-216ENST00000575176 A2MP01023 1474 aa13.79□□□□□ -0.2
SMG6-216ENST00000575176 CLTCQ00610 1675 aaKnown RBP13.79□□□□□ -0.2
SMG6-216ENST00000575176 PREX1Q8TCU6 1659 aa13.77□□□□□ -0.21
SMG6-216ENST00000575176 ZNF777Q9ULD5 760 aaPredicted RBP13.77□□□□□ -0.21
SMG6-216ENST00000575176 DEPDC5O75140 1603 aa13.76□□□□□ -0.21
SMG6-216ENST00000575176 LMTK3Q96Q04 1460 aa13.76□□□□□ -0.21
SMG6-216ENST00000575176 ABCC5O15440 1437 aa13.74□□□□□ -0.21
SMG6-216ENST00000575176 SPAG9O60271 1321 aaKnown RBP13.74□□□□□ -0.21
SMG6-216ENST00000575176 AEBP2Q6ZN18 517 aaPredicted RBP13.73□□□□□ -0.21
SMG6-216ENST00000575176 FAM135AQ9P2D6 1515 aa13.73□□□□□ -0.21
SMG6-216ENST00000575176 DAPK1P53355 1430 aa13.73□□□□□ -0.21
SMG6-216ENST00000575176 ZNF142P52746 1687 aaPredicted RBP13.72□□□□□ -0.21
SMG6-216ENST00000575176 ZC3H13Q5T200 1668 aaKnown RBP13.72□□□□□ -0.21
SMG6-216ENST00000575176 PRDM15P57071 1507 aaPredicted RBP13.71□□□□□ -0.21
SMG6-216ENST00000575176 ADGRL2O95490 1459 aa13.71□□□□□ -0.21
SMG6-216ENST00000575176 CEP152O94986 1710 aa13.7□□□□□ -0.22
SMG6-216ENST00000575176 MYO3AQ8NEV4 1616 aa13.7□□□□□ -0.22
SMG6-216ENST00000575176 DHX29Q7Z478 1369 aaKnown RBP13.69□□□□□ -0.22
SMG6-216ENST00000575176 KDM5DQ9BY66 1539 aa13.68□□□□□ -0.22
SMG6-216ENST00000575176 DUOX2Q9NRD8 1548 aa13.68□□□□□ -0.22
SMG6-216ENST00000575176 ARID4BQ4LE39 1312 aaPredicted RBP13.67□□□□□ -0.22
SMG6-216ENST00000575176 VWDEQ8N2E2 1590 aa13.67□□□□□ -0.22
SMG6-216ENST00000575176 PTPRKQ15262 1439 aa13.67□□□□□ -0.22
SMG6-216ENST00000575176 STRCQ7RTU9 1775 aa13.66□□□□□ -0.22
SMG6-216ENST00000575176 ABCC3O15438 1527 aa13.66□□□□□ -0.22
SMG6-216ENST00000575176 CAMSAP1Q5T5Y3 1602 aa13.66□□□□□ -0.22
SMG6-216ENST00000575176 CNTLNQ9NXG0 1405 aa13.65□□□□□ -0.22
SMG6-216ENST00000575176 SETD1BQ9UPS6 1966 aaKnown RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms