RNA–Protein interactions for RNA: ENST00000562874.2

SF3B3-203, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 401 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-203ENST00000562874 CCDC18Q5T9S5 1454 aa25.7■■□□□ 1.7
SF3B3-203ENST00000562874 CLIP1P30622 1438 aa25.7■■□□□ 1.7
SF3B3-203ENST00000562874 FYCO1Q9BQS8 1478 aa25.69■■□□□ 1.7
SF3B3-203ENST00000562874 PLCH2O75038 1416 aa25.69■■□□□ 1.7
SF3B3-203ENST00000562874 ARHGAP5Q13017 1502 aa25.68■■□□□ 1.7
SF3B3-203ENST00000562874 ZFYVE16Q7Z3T8 1539 aa25.68■■□□□ 1.7
SF3B3-203ENST00000562874 RIMS1Q86UR5 1692 aaKnown RBP25.67■■□□□ 1.7
SF3B3-203ENST00000562874 POGZQ7Z3K3 1410 aa25.63■■□□□ 1.69
SF3B3-203ENST00000562874 CDK11AQ9UQ88 783 aaPredicted RBP25.63■■□□□ 1.69
SF3B3-203ENST00000562874 ITSN2Q9NZM3 1697 aa25.62■■□□□ 1.69
SF3B3-203ENST00000562874 SCAPERQ9BY12 1400 aa25.62■■□□□ 1.69
SF3B3-203ENST00000562874 YEATS2Q9ULM3 1422 aa25.62■■□□□ 1.69
SF3B3-203ENST00000562874 FER1L4A9Z1Z3 1794 aa25.6■■□□□ 1.69
SF3B3-203ENST00000562874 ARID4BQ4LE39 1312 aaPredicted RBP25.56■■□□□ 1.68
SF3B3-203ENST00000562874 PTPRMP28827 1452 aa25.55■■□□□ 1.68
SF3B3-203ENST00000562874 ABCC1P33527 1531 aa25.55■■□□□ 1.68
SF3B3-203ENST00000562874 KDM5CP41229 1560 aa25.55■■□□□ 1.68
SF3B3-203ENST00000562874 MAGI2Q86UL8 1455 aa25.53■■□□□ 1.68
SF3B3-203ENST00000562874 ABCA6Q8N139 1617 aa25.52■■□□□ 1.68
SF3B3-203ENST00000562874 EFCAB2Q5VUJ9 269 aa25.51■■□□□ 1.67
SF3B3-203ENST00000562874 CEP162Q5TB80 1403 aa25.51■■□□□ 1.67
SF3B3-203ENST00000562874 ZNF518AQ6AHZ1 1483 aa25.5■■□□□ 1.67
SF3B3-203ENST00000562874 SAMD9LQ8IVG5 1584 aa25.48■■□□□ 1.67
SF3B3-203ENST00000562874 DIP2CQ9Y2E4 1556 aa25.48■■□□□ 1.67
SF3B3-203ENST00000562874 ARHGEF12Q9NZN5 1544 aa25.45■■□□□ 1.66
SF3B3-203ENST00000562874 C9orf84Q5VXU9 1444 aa25.44■■□□□ 1.66
SF3B3-203ENST00000562874 KIDINS220Q9ULH0 1771 aa25.44■■□□□ 1.66
SF3B3-203ENST00000562874 SYCP2Q9BX26 1530 aa25.42■■□□□ 1.66
SF3B3-203ENST00000562874 ATP10AO60312 1499 aa25.41■■□□□ 1.66
SF3B3-203ENST00000562874 EHBP1L1Q8N3D4 1523 aa25.41■■□□□ 1.66
SF3B3-203ENST00000562874 TRAPPC8Q9Y2L5 1435 aa25.39■■□□□ 1.66
SF3B3-203ENST00000562874 TIAM1Q13009 1591 aa25.39■■□□□ 1.65
SF3B3-203ENST00000562874 GPATCH8Q9UKJ3 1502 aaKnown RBP25.37■■□□□ 1.65
SF3B3-203ENST00000562874 MLECQ14165 292 aa25.37■■□□□ 1.65
SF3B3-203ENST00000562874 AFAP1Q8N556 730 aa25.37■■□□□ 1.65
SF3B3-203ENST00000562874 REREQ9P2R6 1566 aa25.36■■□□□ 1.65
SF3B3-203ENST00000562874 MTUS2Q5JR59 1369 aa25.35■■□□□ 1.65
SF3B3-203ENST00000562874 PLPPR3Q6T4P5 718 aa25.35■■□□□ 1.65
SF3B3-203ENST00000562874 MYT1LQ9UL68 1186 aa25.33■■□□□ 1.65
SF3B3-203ENST00000562874 MLH3Q9UHC1 1453 aa25.33■■□□□ 1.65
SF3B3-203ENST00000562874 SUPT6HQ7KZ85 1726 aaKnown RBP25.32■■□□□ 1.64
SF3B3-203ENST00000562874 LMTK3Q96Q04 1460 aa25.31■■□□□ 1.64
SF3B3-203ENST00000562874 ZNF777Q9ULD5 760 aaPredicted RBP25.3■■□□□ 1.64
SF3B3-203ENST00000562874 INO80Q9ULG1 1556 aaPredicted RBP25.3■■□□□ 1.64
SF3B3-203ENST00000562874 PREX1Q8TCU6 1659 aa25.28■■□□□ 1.64
SF3B3-203ENST00000562874 C3P01024 1663 aa25.27■■□□□ 1.64
SF3B3-203ENST00000562874 LOC105371045A0A1W2PR82 267 aa25.27■■□□□ 1.64
SF3B3-203ENST00000562874 CCNB3Q8WWL7 1395 aa25.27■■□□□ 1.64
SF3B3-203ENST00000562874 ATP7AQ04656 1500 aa25.26■■□□□ 1.63
SF3B3-203ENST00000562874 AGLP35573 1532 aa25.22■■□□□ 1.63
SF3B3-203ENST00000562874 ADGBQ8N7X0 1667 aa25.21■■□□□ 1.63
SF3B3-203ENST00000562874 PLEKHH2Q8IVE3 1493 aa25.21■■□□□ 1.63
SF3B3-203ENST00000562874 VPS8Q8N3P4 1428 aa25.2■■□□□ 1.63
SF3B3-203ENST00000562874 CFDP1Q9UEE9 299 aaPredicted RBP25.19■■□□□ 1.62
SF3B3-203ENST00000562874 NCOA2Q15596 1464 aa25.18■■□□□ 1.62
SF3B3-203ENST00000562874 HNRNPMP52272 730 aaKnown RBP eCLIP25.18■■□□□ 1.62
SF3B3-203ENST00000562874 PLXNC1O60486 1568 aa25.18■■□□□ 1.62
SF3B3-203ENST00000562874 KIAA1107Q9UPP5 1409 aa25.16■■□□□ 1.62
SF3B3-203ENST00000562874 CLTCQ00610 1675 aaKnown RBP25.16■■□□□ 1.62
SF3B3-203ENST00000562874 MROH2AA6NES4 1674 aa25.14■■□□□ 1.62
SF3B3-203ENST00000562874 CAMSAP2Q08AD1 1489 aa25.13■■□□□ 1.61
SF3B3-203ENST00000562874 SPAG9O60271 1321 aaKnown RBP25.12■■□□□ 1.61
SF3B3-203ENST00000562874 ZNF644Q9H582 1327 aaPredicted RBP25.12■■□□□ 1.61
SF3B3-203ENST00000562874 SETD1BQ9UPS6 1966 aaKnown RBP25.12■■□□□ 1.61
SF3B3-203ENST00000562874 CEBPAP49715 358 aaPredicted RBP25.11■■□□□ 1.61
SF3B3-203ENST00000562874 HSPA2P54652 639 aa25.11■■□□□ 1.61
SF3B3-203ENST00000562874 LRRC9Q6ZRR7 1453 aa25.09■■□□□ 1.61
SF3B3-203ENST00000562874 MBD5Q9P267 1494 aa25.09■■□□□ 1.61
SF3B3-203ENST00000562874 A2MP01023 1474 aa25.07■■□□□ 1.6
SF3B3-203ENST00000562874 STRCQ7RTU9 1775 aa25.05■■□□□ 1.6
SF3B3-203ENST00000562874 ILDR1Q86SU0 546 aaPredicted RBP25.04■■□□□ 1.6
SF3B3-203ENST00000562874 CCDC141Q6ZP82 1450 aa25.03■■□□□ 1.6
SF3B3-203ENST00000562874 ARHGEF5Q12774 1597 aa25.01■■□□□ 1.59
SF3B3-203ENST00000562874 MAP3K1Q13233 1512 aa25.01■■□□□ 1.59
SF3B3-203ENST00000562874 UHRF1BP1Q6BDS2 1440 aa25■■□□□ 1.59
SF3B3-203ENST00000562874 CNTLNQ9NXG0 1405 aa24.99■■□□□ 1.59
SF3B3-203ENST00000562874 ESF1Q9H501 851 aaKnown RBP24.98■■□□□ 1.59
SF3B3-203ENST00000562874 MYO3AQ8NEV4 1616 aa24.97■■□□□ 1.59
SF3B3-203ENST00000562874 CROCC2H7BZ55 1655 aa24.96■■□□□ 1.59
SF3B3-203ENST00000562874 KANK4Q5T7N3 995 aaPredicted RBP24.95■■□□□ 1.58
SF3B3-203ENST00000562874 ZNF142P52746 1687 aaPredicted RBP24.94■■□□□ 1.58
SF3B3-203ENST00000562874 RTEL1-TNFRSF6BF6WH68 1400 aa24.94■■□□□ 1.58
SF3B3-203ENST00000562874 MAST1Q9Y2H9 1570 aa24.91■■□□□ 1.58
SF3B3-203ENST00000562874 MYOM3Q5VTT5 1437 aa24.89■■□□□ 1.58
SF3B3-203ENST00000562874 GGT6Q6P531 493 aa24.88■■□□□ 1.57
SF3B3-203ENST00000562874 PTPN23Q9H3S7 1636 aa24.87■■□□□ 1.57
SF3B3-203ENST00000562874 ZMYM3Q14202 1370 aa24.86■■□□□ 1.57
SF3B3-203ENST00000562874 NPATQ14207 1427 aa24.85■■□□□ 1.57
SF3B3-203ENST00000562874 CEP152O94986 1710 aa24.84■■□□□ 1.57
SF3B3-203ENST00000562874 DHX29Q7Z478 1369 aaKnown RBP24.84■■□□□ 1.57
SF3B3-203ENST00000562874 CEP170BQ9Y4F5 1589 aaPredicted RBP24.84■■□□□ 1.57
SF3B3-203ENST00000562874 RNF17Q9BXT8 1623 aaKnown RBP24.83■■□□□ 1.57
SF3B3-203ENST00000562874 KDM5DQ9BY66 1539 aa24.83■■□□□ 1.57
SF3B3-203ENST00000562874 CAMSAP1Q5T5Y3 1602 aa24.83■■□□□ 1.56
SF3B3-203ENST00000562874 EIF2AK4Q9P2K8 1649 aaKnown RBP24.83■■□□□ 1.56
SF3B3-203ENST00000562874 MIA2Q96PC5 1412 aa24.81■■□□□ 1.56
SF3B3-203ENST00000562874 PTPRKQ15262 1439 aa24.8■■□□□ 1.56
SF3B3-203ENST00000562874 CFAP65Q6ZU64 1925 aaKnown RBP24.8■■□□□ 1.56
SF3B3-203ENST00000562874 ZC3H13Q5T200 1668 aaKnown RBP24.79■■□□□ 1.56
SF3B3-203ENST00000562874 DNMT1P26358 1616 aaKnown RBP24.79■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms