RNA–Protein interactions for RNA: ENST00000553455.1

SYNE2-210, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2 BASIC

Gene SYNE2, Length 674 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-210ENST00000553455 TESPA1A2RU30 521 aaPredicted RBP11.47□□□□□ -0.57
SYNE2-210ENST00000553455 SEMA3EO15041 775 aa11.47□□□□□ -0.57
SYNE2-210ENST00000553455 OCEL1Q9H607 264 aa11.47□□□□□ -0.57
SYNE2-210ENST00000553455 PPP1R15BQ5SWA1 713 aa11.46□□□□□ -0.57
SYNE2-210ENST00000553455 TMEM121BQ9BXQ6 578 aaPredicted RBP11.46□□□□□ -0.57
SYNE2-210ENST00000553455 DSG2Q14126 1118 aa11.42□□□□□ -0.58
SYNE2-210ENST00000553455 PELP1Q8IZL8 1130 aaKnown RBP11.42□□□□□ -0.58
SYNE2-210ENST00000553455 BOLA1Q9Y3E2 137 aa11.42□□□□□ -0.58
SYNE2-210ENST00000553455 PLCG2P16885 1265 aa11.39□□□□□ -0.59
SYNE2-210ENST00000553455 EMILIN3Q9NT22 766 aa11.39□□□□□ -0.59
SYNE2-210ENST00000553455 TULP1O00294 542 aaPredicted RBP11.38□□□□□ -0.59
SYNE2-210ENST00000553455 KIF3CO14782 793 aa11.38□□□□□ -0.59
SYNE2-210ENST00000553455 FOXK1P85037 733 aa11.38□□□□□ -0.59
SYNE2-210ENST00000553455 TMC2Q8TDI7 906 aa11.37□□□□□ -0.59
SYNE2-210ENST00000553455 COLQQ9Y215 455 aaPredicted RBP11.37□□□□□ -0.59
SYNE2-210ENST00000553455 C2orf72A6NCS6 295 aa11.35□□□□□ -0.59
SYNE2-210ENST00000553455 DCBLD2Q96PD2 775 aa11.35□□□□□ -0.59
SYNE2-210ENST00000553455 POTEFA5A3E0 1075 aa11.34□□□□□ -0.59
SYNE2-210ENST00000553455 DPYSL4O14531 572 aa11.33□□□□□ -0.6
SYNE2-210ENST00000553455 TMEM92Q6UXU6 159 aa11.33□□□□□ -0.6
SYNE2-210ENST00000553455 ZC3H15Q8WU90 426 aaKnown RBP11.33□□□□□ -0.6
SYNE2-210ENST00000553455 G3V3G9 751 aa11.32□□□□□ -0.6
SYNE2-210ENST00000553455 PLPP6Q8IY26 295 aa11.32□□□□□ -0.6
SYNE2-210ENST00000553455 L3MBTL3Q96JM7 780 aaPredicted RBP11.32□□□□□ -0.6
SYNE2-210ENST00000553455 MLLT3P42568 568 aaPredicted RBP11.31□□□□□ -0.6
SYNE2-210ENST00000553455 SEC24BO95487 1268 aa11.3□□□□□ -0.6
SYNE2-210ENST00000553455 POTEIP0CG38 1075 aa11.3□□□□□ -0.6
SYNE2-210ENST00000553455 PDIA6Q15084 440 aa11.3□□□□□ -0.6
SYNE2-210ENST00000553455 SLC39A7Q92504 469 aa11.3□□□□□ -0.6
SYNE2-210ENST00000553455 SMYD5Q6GMV2 418 aa11.29□□□□□ -0.6
SYNE2-210ENST00000553455 C7P10643 843 aa11.27□□□□□ -0.61
SYNE2-210ENST00000553455 SPDYE16A6NNV3 312 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-210ENST00000553455 METRNQ9UJH8 293 aa11.26□□□□□ -0.61
SYNE2-210ENST00000553455 RBM26Q5T8P6 1007 aaKnown RBP11.23□□□□□ -0.61
SYNE2-210ENST00000553455 ZMYND10O75800 440 aa11.22□□□□□ -0.61
SYNE2-210ENST00000553455 SP7Q8TDD2 431 aaPredicted RBP11.2□□□□□ -0.62
SYNE2-210ENST00000553455 OXER1Q8TDS5 423 aa11.19□□□□□ -0.62
SYNE2-210ENST00000553455 SLC24A3Q9HC58 644 aa11.19□□□□□ -0.62
SYNE2-210ENST00000553455 UPF1Q92900 1129 aaKnown RBP eCLIP11.18□□□□□ -0.62
SYNE2-210ENST00000553455 MAP3K9P80192 1104 aa11.17□□□□□ -0.62
SYNE2-210ENST00000553455 BARGINQ6ZT62 677 aa11.16□□□□□ -0.62
SYNE2-210ENST00000553455 GPIHBP1Q8IV16 184 aa11.16□□□□□ -0.62
SYNE2-210ENST00000553455 BRPF1P55201 1214 aaPredicted RBP11.15□□□□□ -0.62
SYNE2-210ENST00000553455 C3orf67Q6ZVT6 689 aa11.15□□□□□ -0.62
SYNE2-210ENST00000553455 GPR37O15354 613 aa11.12□□□□□ -0.63
SYNE2-210ENST00000553455 GRXCR2A6NFK2 248 aa11.1□□□□□ -0.63
SYNE2-210ENST00000553455 PTGER2P43116 358 aa11.1□□□□□ -0.63
SYNE2-210ENST00000553455 PTCD2Q8WV60 388 aaKnown RBP11.1□□□□□ -0.63
SYNE2-210ENST00000553455 SLC34A2O95436 690 aa11.08□□□□□ -0.64
SYNE2-210ENST00000553455 OSBPP22059 807 aa11.08□□□□□ -0.64
SYNE2-210ENST00000553455 EVI5O60447 810 aa11.07□□□□□ -0.64
SYNE2-210ENST00000553455 TMEM132AQ24JP5 1023 aa11.07□□□□□ -0.64
SYNE2-210ENST00000553455 DDX12PQ92771 950 aa11.06□□□□□ -0.64
SYNE2-210ENST00000553455 TBC1D12O60347 775 aa11.05□□□□□ -0.64
SYNE2-210ENST00000553455 PRIM1P49642 420 aaKnown RBP11.04□□□□□ -0.64
SYNE2-210ENST00000553455 NEUROD2Q15784 382 aa11.04□□□□□ -0.64
SYNE2-210ENST00000553455 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.04□□□□□ -0.64
SYNE2-210ENST00000553455 AK7Q96M32 723 aa11.03□□□□□ -0.64
SYNE2-210ENST00000553455 ANO8Q9HCE9 1232 aaPredicted RBP11.02□□□□□ -0.65
SYNE2-210ENST00000553455 NUTM2FA1L443 756 aa11□□□□□ -0.65
SYNE2-210ENST00000553455 POTEJP0CG39 1038 aa11□□□□□ -0.65
SYNE2-210ENST00000553455 KRI1Q8N9T8 703 aaKnown RBP11□□□□□ -0.65
SYNE2-210ENST00000553455 ZNF316A6NFI3 1004 aaPredicted RBP10.97□□□□□ -0.65
SYNE2-210ENST00000553455 PCDHGA4Q9Y5G9 962 aa10.97□□□□□ -0.65
SYNE2-210ENST00000553455 KDM4FA0A1W2PPD8 638 aa10.96□□□□□ -0.65
SYNE2-210ENST00000553455 TRIM66O15016 1216 aa10.96□□□□□ -0.65
SYNE2-210ENST00000553455 POTEB2H3BUK9 544 aa10.95□□□□□ -0.66
SYNE2-210ENST00000553455 GTF3C3Q9Y5Q9 886 aa10.95□□□□□ -0.66
SYNE2-210ENST00000553455 GNPATO15228 680 aa10.94□□□□□ -0.66
SYNE2-210ENST00000553455 GPBP1L1Q9HC44 474 aaPredicted RBP10.94□□□□□ -0.66
SYNE2-210ENST00000553455 FCHSD2O94868 740 aa10.93□□□□□ -0.66
SYNE2-210ENST00000553455 FECHP22830 423 aa10.93□□□□□ -0.66
SYNE2-210ENST00000553455 MAP2K5Q13163 448 aa10.93□□□□□ -0.66
SYNE2-210ENST00000553455 PTGDRQ13258 359 aa10.93□□□□□ -0.66
SYNE2-210ENST00000553455 HIC1Q14526 733 aa10.93□□□□□ -0.66
SYNE2-210ENST00000553455 MINK1Q8N4C8 1332 aaPredicted RBP10.92□□□□□ -0.66
SYNE2-210ENST00000553455 PHF14O94880 888 aa10.92□□□□□ -0.66
SYNE2-210ENST00000553455 EN1Q05925 392 aaPredicted RBP10.92□□□□□ -0.66
SYNE2-210ENST00000553455 PDE4DQ08499 809 aa10.91□□□□□ -0.66
SYNE2-210ENST00000553455 CCDC102AQ96A19 550 aa10.91□□□□□ -0.66
SYNE2-210ENST00000553455 CDHR5Q9HBB8 845 aa10.91□□□□□ -0.66
SYNE2-210ENST00000553455 PCDHGA10Q9Y5H3 936 aa10.91□□□□□ -0.66
SYNE2-210ENST00000553455 IRF6O14896 467 aa10.9□□□□□ -0.66
SYNE2-210ENST00000553455 EPAS1Q99814 870 aa10.9□□□□□ -0.66
SYNE2-210ENST00000553455 HOXB3P14651 431 aaPredicted RBP10.89□□□□□ -0.67
SYNE2-210ENST00000553455 KDM4CQ9H3R0 1056 aa10.88□□□□□ -0.67
SYNE2-210ENST00000553455 NPDC1Q9NQX5 325 aaPredicted RBP10.88□□□□□ -0.67
SYNE2-210ENST00000553455 JPH4Q96JJ6 628 aa10.87□□□□□ -0.67
SYNE2-210ENST00000553455 TYW1BQ6NUM6 668 aa10.86□□□□□ -0.67
SYNE2-210ENST00000553455 SLAIN1Q8ND83 568 aa10.86□□□□□ -0.67
SYNE2-210ENST00000553455 MAP3K7O43318 606 aa10.85□□□□□ -0.67
SYNE2-210ENST00000553455 TSR1Q2NL82 804 aaKnown RBP10.85□□□□□ -0.67
SYNE2-210ENST00000553455 RBM33Q96EV2 1170 aaKnown RBP10.85□□□□□ -0.67
SYNE2-210ENST00000553455 TIMELESSQ9UNS1 1208 aa10.85□□□□□ -0.67
SYNE2-210ENST00000553455 FOSBP53539 338 aa10.84□□□□□ -0.67
SYNE2-210ENST00000553455 AMHR2Q16671 573 aa10.84□□□□□ -0.67
SYNE2-210ENST00000553455 KHSRPQ92945 711 aaKnown RBP eCLIP10.84□□□□□ -0.67
SYNE2-210ENST00000553455 DOK7Q18PE1 504 aa10.83□□□□□ -0.68
SYNE2-210ENST00000553455 NUDT7P0C024 238 aa10.82□□□□□ -0.68
SYNE2-210ENST00000553455 ARSIQ5FYB1 569 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms