RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 DPY19L2Q6NUT2 758 aa9.81□□□□□ -0.84
CD44-220ENST00000525688 SMYD5Q6GMV2 418 aa9.8□□□□□ -0.84
CD44-220ENST00000525688 MICALL2Q8IY33 904 aa9.8□□□□□ -0.84
CD44-220ENST00000525688 TMEM121BQ9BXQ6 578 aaPredicted RBP9.8□□□□□ -0.84
CD44-220ENST00000525688 OCEL1Q9H607 264 aa9.79□□□□□ -0.84
CD44-220ENST00000525688 ZC3H15Q8WU90 426 aaKnown RBP9.78□□□□□ -0.84
CD44-220ENST00000525688 FOXK1P85037 733 aa9.76□□□□□ -0.85
CD44-220ENST00000525688 DSG2Q14126 1118 aa9.75□□□□□ -0.85
CD44-220ENST00000525688 TMC2Q8TDI7 906 aa9.74□□□□□ -0.85
CD44-220ENST00000525688 BOLA1Q9Y3E2 137 aa9.74□□□□□ -0.85
CD44-220ENST00000525688 EMILIN3Q9NT22 766 aa9.73□□□□□ -0.85
CD44-220ENST00000525688 KIF3CO14782 793 aa9.72□□□□□ -0.85
CD44-220ENST00000525688 SPDYE16A6NNV3 312 aaPredicted RBP9.71□□□□□ -0.86
CD44-220ENST00000525688 ZMYND10O75800 440 aa9.7□□□□□ -0.86
CD44-220ENST00000525688 PDIA6Q15084 440 aa9.7□□□□□ -0.86
CD44-220ENST00000525688 GABBR2O75899 941 aa9.69□□□□□ -0.86
CD44-220ENST00000525688 PLCG2P16885 1265 aa9.69□□□□□ -0.86
CD44-220ENST00000525688 TMEM132AQ24JP5 1023 aa9.69□□□□□ -0.86
CD44-220ENST00000525688 L3MBTL3Q96JM7 780 aaPredicted RBP9.69□□□□□ -0.86
CD44-220ENST00000525688 C2orf72A6NCS6 295 aa9.68□□□□□ -0.86
CD44-220ENST00000525688 G3V3G9 751 aa9.68□□□□□ -0.86
CD44-220ENST00000525688 DPYSL4O14531 572 aa9.68□□□□□ -0.86
CD44-220ENST00000525688 MLLT3P42568 568 aaPredicted RBP9.68□□□□□ -0.86
CD44-220ENST00000525688 PLPP6Q8IY26 295 aa9.67□□□□□ -0.86
CD44-220ENST00000525688 BARGINQ6ZT62 677 aa9.65□□□□□ -0.86
CD44-220ENST00000525688 BRPF1P55201 1214 aaPredicted RBP9.64□□□□□ -0.87
CD44-220ENST00000525688 PELP1Q8IZL8 1130 aaKnown RBP9.64□□□□□ -0.87
CD44-220ENST00000525688 SLC24A3Q9HC58 644 aa9.64□□□□□ -0.87
CD44-220ENST00000525688 RBM26Q5T8P6 1007 aaKnown RBP9.63□□□□□ -0.87
CD44-220ENST00000525688 DCBLD2Q96PD2 775 aa9.62□□□□□ -0.87
CD44-220ENST00000525688 COLQQ9Y215 455 aaPredicted RBP9.62□□□□□ -0.87
CD44-220ENST00000525688 SEC24BO95487 1268 aa9.61□□□□□ -0.87
CD44-220ENST00000525688 GPIHBP1Q8IV16 184 aa9.61□□□□□ -0.87
CD44-220ENST00000525688 SLC39A7Q92504 469 aa9.61□□□□□ -0.87
CD44-220ENST00000525688 TMEM92Q6UXU6 159 aa9.6□□□□□ -0.87
CD44-220ENST00000525688 C7P10643 843 aa9.59□□□□□ -0.87
CD44-220ENST00000525688 GTF3C3Q9Y5Q9 886 aa9.59□□□□□ -0.87
CD44-220ENST00000525688 MAP3K9P80192 1104 aa9.58□□□□□ -0.88
CD44-220ENST00000525688 OXER1Q8TDS5 423 aa9.58□□□□□ -0.88
CD44-220ENST00000525688 POTEFA5A3E0 1075 aa9.57□□□□□ -0.88
CD44-220ENST00000525688 PTGER2P43116 358 aa9.56□□□□□ -0.88
CD44-220ENST00000525688 NEUROD2Q15784 382 aa9.55□□□□□ -0.88
CD44-220ENST00000525688 AK7Q96M32 723 aa9.55□□□□□ -0.88
CD44-220ENST00000525688 GPR37O15354 613 aa9.53□□□□□ -0.88
CD44-220ENST00000525688 POTEHQ6S545 545 aa9.53□□□□□ -0.88
CD44-220ENST00000525688 TBC1D12O60347 775 aa9.52□□□□□ -0.89
CD44-220ENST00000525688 METRNQ9UJH8 293 aa9.52□□□□□ -0.89
CD44-220ENST00000525688 POTEIP0CG38 1075 aa9.51□□□□□ -0.89
CD44-220ENST00000525688 KRI1Q8N9T8 703 aaKnown RBP9.51□□□□□ -0.89
CD44-220ENST00000525688 PTCD2Q8WV60 388 aaKnown RBP9.51□□□□□ -0.89
CD44-220ENST00000525688 UPF1Q92900 1129 aaKnown RBP eCLIP9.51□□□□□ -0.89
CD44-220ENST00000525688 GRXCR2A6NFK2 248 aa9.5□□□□□ -0.89
CD44-220ENST00000525688 OSBPP22059 807 aa9.5□□□□□ -0.89
CD44-220ENST00000525688 ERICH6Q7L0X2 663 aa9.5□□□□□ -0.89
CD44-220ENST00000525688 SLC34A2O95436 690 aa9.49□□□□□ -0.89
CD44-220ENST00000525688 C3orf67Q6ZVT6 689 aa9.48□□□□□ -0.89
CD44-220ENST00000525688 EVI5O60447 810 aa9.47□□□□□ -0.89
CD44-220ENST00000525688 TRIM66O15016 1216 aa9.46□□□□□ -0.9
CD44-220ENST00000525688 ANO8Q9HCE9 1232 aaPredicted RBP9.46□□□□□ -0.9
CD44-220ENST00000525688 DAXXQ9UER7 740 aaPredicted RBP9.45□□□□□ -0.9
CD44-220ENST00000525688 TIMELESSQ9UNS1 1208 aa9.45□□□□□ -0.9
CD44-220ENST00000525688 MINK1Q8N4C8 1332 aaPredicted RBP9.45□□□□□ -0.9
CD44-220ENST00000525688 NUTM2FA1L443 756 aa9.44□□□□□ -0.9
CD44-220ENST00000525688 DDX12PQ92771 950 aa9.44□□□□□ -0.9
CD44-220ENST00000525688 ZNF316A6NFI3 1004 aaPredicted RBP9.43□□□□□ -0.9
CD44-220ENST00000525688 GNPATO15228 680 aa9.42□□□□□ -0.9
CD44-220ENST00000525688 PDE4DQ08499 809 aa9.42□□□□□ -0.9
CD44-220ENST00000525688 MAP2K5Q13163 448 aa9.42□□□□□ -0.9
CD44-220ENST00000525688 HIC1Q14526 733 aa9.42□□□□□ -0.9
CD44-220ENST00000525688 SP7Q8TDD2 431 aaPredicted RBP9.42□□□□□ -0.9
CD44-220ENST00000525688 FCHSD2O94868 740 aa9.41□□□□□ -0.9
CD44-220ENST00000525688 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.41□□□□□ -0.9
CD44-220ENST00000525688 PRIM1P49642 420 aaKnown RBP9.4□□□□□ -0.9
CD44-220ENST00000525688 KDM4CQ9H3R0 1056 aa9.4□□□□□ -0.9
CD44-220ENST00000525688 GPBP1L1Q9HC44 474 aaPredicted RBP9.4□□□□□ -0.9
CD44-220ENST00000525688 IRF6O14896 467 aa9.39□□□□□ -0.91
CD44-220ENST00000525688 PHF14O94880 888 aa9.38□□□□□ -0.91
CD44-220ENST00000525688 PTGDRQ13258 359 aa9.38□□□□□ -0.91
CD44-220ENST00000525688 AMHR2Q16671 573 aa9.37□□□□□ -0.91
CD44-220ENST00000525688 CCDC102AQ96A19 550 aa9.37□□□□□ -0.91
CD44-220ENST00000525688 EPAS1Q99814 870 aa9.37□□□□□ -0.91
CD44-220ENST00000525688 KDM4FA0A1W2PPD8 638 aa9.35□□□□□ -0.91
CD44-220ENST00000525688 EN1Q05925 392 aaPredicted RBP9.35□□□□□ -0.91
CD44-220ENST00000525688 PCDHGA4Q9Y5G9 962 aa9.35□□□□□ -0.91
CD44-220ENST00000525688 FECHP22830 423 aa9.34□□□□□ -0.91
CD44-220ENST00000525688 NPDC1Q9NQX5 325 aaPredicted RBP9.32□□□□□ -0.92
CD44-220ENST00000525688 PCDHGA10Q9Y5H3 936 aa9.32□□□□□ -0.92
CD44-220ENST00000525688 SLAIN1Q8ND83 568 aa9.31□□□□□ -0.92
CD44-220ENST00000525688 IL27Q8NEV9 243 aa9.31□□□□□ -0.92
CD44-220ENST00000525688 TYW1BQ6NUM6 668 aa9.3□□□□□ -0.92
CD44-220ENST00000525688 FBXW7Q969H0 707 aa9.3□□□□□ -0.92
CD44-220ENST00000525688 JPH4Q96JJ6 628 aa9.3□□□□□ -0.92
CD44-220ENST00000525688 CDHR5Q9HBB8 845 aa9.29□□□□□ -0.92
CD44-220ENST00000525688 MAP3K7O43318 606 aa9.28□□□□□ -0.92
CD44-220ENST00000525688 C14orf37Q86TY3 774 aa9.28□□□□□ -0.92
CD44-220ENST00000525688 PARP9Q8IXQ6 854 aa9.28□□□□□ -0.92
CD44-220ENST00000525688 DDRGK1Q96HY6 314 aa9.27□□□□□ -0.93
CD44-220ENST00000525688 FAM117AQ9C073 453 aa9.27□□□□□ -0.93
CD44-220ENST00000525688 POTEJP0CG39 1038 aa9.26□□□□□ -0.93
CD44-220ENST00000525688 FOSBP53539 338 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms