RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 CYB5RLQ6IPT4 315 aa14.68□□□□□ -0.06
USP54-214ENST00000492357 GLI2P10070 1586 aa14.68□□□□□ -0.06
USP54-214ENST00000492357 PLEKHH2Q8IVE3 1493 aa14.67□□□□□ -0.06
USP54-214ENST00000492357 TTC37Q6PGP7 1564 aa14.66□□□□□ -0.06
USP54-214ENST00000492357 PLCH2O75038 1416 aa14.66□□□□□ -0.06
USP54-214ENST00000492357 DNAJC5Q9H3Z4 198 aa14.64□□□□□ -0.07
USP54-214ENST00000492357 CFAP74Q9C0B2 1584 aa14.64□□□□□ -0.07
USP54-214ENST00000492357 CDC42BPBQ9Y5S2 1711 aa14.63□□□□□ -0.07
USP54-214ENST00000492357 RSPH4AQ5TD94 716 aa14.63□□□□□ -0.07
USP54-214ENST00000492357 ARHGEF5Q12774 1597 aa14.62□□□□□ -0.07
USP54-214ENST00000492357 CFDP1Q9UEE9 299 aaPredicted RBP14.62□□□□□ -0.07
USP54-214ENST00000492357 KIAA1107Q9UPP5 1409 aa14.62□□□□□ -0.07
USP54-214ENST00000492357 AKNAQ7Z591 1439 aa14.61□□□□□ -0.07
USP54-214ENST00000492357 PCGF6Q9BYE7 350 aa14.61□□□□□ -0.07
USP54-214ENST00000492357 DNMT1P26358 1616 aaKnown RBP14.61□□□□□ -0.07
USP54-214ENST00000492357 CAMSAP2Q08AD1 1489 aa14.61□□□□□ -0.07
USP54-214ENST00000492357 ACIN1Q9UKV3 1341 aaKnown RBP14.61□□□□□ -0.07
USP54-214ENST00000492357 SHANK2Q9UPX8 1470 aa14.59□□□□□ -0.07
USP54-214ENST00000492357 ARHGAP5Q13017 1502 aa14.59□□□□□ -0.07
USP54-214ENST00000492357 DIP2BQ9P265 1576 aa14.59□□□□□ -0.07
USP54-214ENST00000492357 MAP3K4Q9Y6R4 1608 aa14.59□□□□□ -0.07
USP54-214ENST00000492357 EFCAB2Q5VUJ9 269 aa14.58□□□□□ -0.08
USP54-214ENST00000492357 NEO1Q92859 1461 aa14.57□□□□□ -0.08
USP54-214ENST00000492357 SAMD9LQ8IVG5 1584 aa14.56□□□□□ -0.08
USP54-214ENST00000492357 KCNH8Q96L42 1107 aa14.56□□□□□ -0.08
USP54-214ENST00000492357 CROCC2H7BZ55 1655 aa14.55□□□□□ -0.08
USP54-214ENST00000492357 FAM50AQ14320 339 aaKnown RBP14.55□□□□□ -0.08
USP54-214ENST00000492357 ROCK1Q13464 1354 aa14.55□□□□□ -0.08
USP54-214ENST00000492357 CD109Q6YHK3 1445 aa14.55□□□□□ -0.08
USP54-214ENST00000492357 HRCP23327 699 aa14.54□□□□□ -0.08
USP54-214ENST00000492357 DAPK1P53355 1430 aa14.54□□□□□ -0.08
USP54-214ENST00000492357 FANCAO15360 1455 aa14.54□□□□□ -0.08
USP54-214ENST00000492357 ABCC1P33527 1531 aa14.54□□□□□ -0.08
USP54-214ENST00000492357 MAST1Q9Y2H9 1570 aa14.54□□□□□ -0.08
USP54-214ENST00000492357 ADGRL2O95490 1459 aa14.53□□□□□ -0.08
USP54-214ENST00000492357 CCDC141Q6ZP82 1450 aa14.53□□□□□ -0.08
USP54-214ENST00000492357 MBD5Q9P267 1494 aa14.53□□□□□ -0.08
USP54-214ENST00000492357 ADGBQ8N7X0 1667 aa14.52□□□□□ -0.08
USP54-214ENST00000492357 TEX14Q8IWB6 1497 aa14.52□□□□□ -0.08
USP54-214ENST00000492357 HFM1A2PYH4 1435 aa14.51□□□□□ -0.09
USP54-214ENST00000492357 ABCC5O15440 1437 aa14.5□□□□□ -0.09
USP54-214ENST00000492357 PIAS4Q8N2W9 510 aaPredicted RBP14.5□□□□□ -0.09
USP54-214ENST00000492357 GCC2Q8IWJ2 1684 aa14.49□□□□□ -0.09
USP54-214ENST00000492357 KIF13AQ9H1H9 1805 aa14.48□□□□□ -0.09
USP54-214ENST00000492357 SYCP2Q9BX26 1530 aa14.48□□□□□ -0.09
USP54-214ENST00000492357 RTEL1-TNFRSF6BF6WH68 1400 aa14.48□□□□□ -0.09
USP54-214ENST00000492357 ADGRL1O94910 1474 aa14.47□□□□□ -0.09
USP54-214ENST00000492357 PLXNC1O60486 1568 aa14.47□□□□□ -0.09
USP54-214ENST00000492357 TSPY4P0CV99 314 aa14.46□□□□□ -0.09
USP54-214ENST00000492357 TSPY10P0CW01 314 aa14.46□□□□□ -0.09
USP54-214ENST00000492357 SETD5Q9C0A6 1442 aa14.46□□□□□ -0.09
USP54-214ENST00000492357 ANKRD30AQ9BXX3 1397 aa14.46□□□□□ -0.1
USP54-214ENST00000492357 ZNF644Q9H582 1327 aaPredicted RBP14.45□□□□□ -0.1
USP54-214ENST00000492357 ZNF518AQ6AHZ1 1483 aa14.45□□□□□ -0.1
USP54-214ENST00000492357 PTPRKQ15262 1439 aa14.45□□□□□ -0.1
USP54-214ENST00000492357 C9orf84Q5VXU9 1444 aa14.45□□□□□ -0.1
USP54-214ENST00000492357 ZNF777Q9ULD5 760 aaPredicted RBP14.45□□□□□ -0.1
USP54-214ENST00000492357 NCOA1Q15788 1441 aa14.44□□□□□ -0.1
USP54-214ENST00000492357 KDM5CP41229 1560 aa14.43□□□□□ -0.1
USP54-214ENST00000492357 NAIPQ13075 1403 aa14.43□□□□□ -0.1
USP54-214ENST00000492357 FAM69CQ0P6D2 419 aa14.43□□□□□ -0.1
USP54-214ENST00000492357 PPRC1Q5VV67 1664 aaKnown RBP14.42□□□□□ -0.1
USP54-214ENST00000492357 SCAPERQ9BY12 1400 aa14.42□□□□□ -0.1
USP54-214ENST00000492357 ARHGEF12Q9NZN5 1544 aa14.42□□□□□ -0.1
USP54-214ENST00000492357 POGZQ7Z3K3 1410 aa14.41□□□□□ -0.1
USP54-214ENST00000492357 INO80Q9ULG1 1556 aaPredicted RBP14.41□□□□□ -0.1
USP54-214ENST00000492357 DENND4BO75064 1496 aaPredicted RBP14.4□□□□□ -0.1
USP54-214ENST00000492357 MLH3Q9UHC1 1453 aa14.4□□□□□ -0.1
USP54-214ENST00000492357 HNRNPMP52272 730 aaKnown RBP eCLIP14.39□□□□□ -0.11
USP54-214ENST00000492357 ZFYVE16Q7Z3T8 1539 aa14.39□□□□□ -0.11
USP54-214ENST00000492357 CLSPNQ9HAW4 1339 aa14.39□□□□□ -0.11
USP54-214ENST00000492357 MAGI2Q86UL8 1455 aa14.38□□□□□ -0.11
USP54-214ENST00000492357 ZMYM4Q5VZL5 1548 aa14.38□□□□□ -0.11
USP54-214ENST00000492357 ITGAEP38570 1179 aa14.38□□□□□ -0.11
USP54-214ENST00000492357 TRAPPC8Q9Y2L5 1435 aa14.38□□□□□ -0.11
USP54-214ENST00000492357 RAB3GAP2Q9H2M9 1393 aa14.37□□□□□ -0.11
USP54-214ENST00000492357 ATP7AQ04656 1500 aa14.37□□□□□ -0.11
USP54-214ENST00000492357 DUOX2Q9NRD8 1548 aa14.37□□□□□ -0.11
USP54-214ENST00000492357 RICTORQ6R327 1708 aa14.37□□□□□ -0.11
USP54-214ENST00000492357 HECW2Q9P2P5 1572 aa14.36□□□□□ -0.11
USP54-214ENST00000492357 ERBINQ96RT1 1412 aa14.36□□□□□ -0.11
USP54-214ENST00000492357 SPAG9O60271 1321 aaKnown RBP14.36□□□□□ -0.11
USP54-214ENST00000492357 KIF15Q9NS87 1388 aa14.34□□□□□ -0.11
USP54-214ENST00000492357 EIF2AK4Q9P2K8 1649 aaKnown RBP14.34□□□□□ -0.11
USP54-214ENST00000492357 ANKRD50Q9ULJ7 1429 aa14.34□□□□□ -0.11
USP54-214ENST00000492357 KIDINS220Q9ULH0 1771 aa14.32□□□□□ -0.12
USP54-214ENST00000492357 BCORL1Q5H9F3 1711 aa14.32□□□□□ -0.12
USP54-214ENST00000492357 TSPOAP1O95153 1857 aa14.31□□□□□ -0.12
USP54-214ENST00000492357 KDM5DQ9BY66 1539 aa14.31□□□□□ -0.12
USP54-214ENST00000492357 REREQ9P2R6 1566 aa14.31□□□□□ -0.12
USP54-214ENST00000492357 CHIC2Q9UKJ5 165 aa14.31□□□□□ -0.12
USP54-214ENST00000492357 FRMPD1Q5SYB0 1578 aa14.3□□□□□ -0.12
USP54-214ENST00000492357 AFAP1Q8N556 730 aa14.29□□□□□ -0.12
USP54-214ENST00000492357 UNC13BO14795 1591 aa14.29□□□□□ -0.12
USP54-214ENST00000492357 RRP7BPQ9NSQ0 103 aa14.28□□□□□ -0.12
USP54-214ENST00000492357 DHX57Q6P158 1386 aaKnown RBP14.27□□□□□ -0.12
USP54-214ENST00000492357 DHX29Q7Z478 1369 aaKnown RBP14.27□□□□□ -0.12
USP54-214ENST00000492357 ZEB1P37275 1124 aaPredicted RBP14.27□□□□□ -0.13
USP54-214ENST00000492357 DEPDC5O75140 1603 aa14.26□□□□□ -0.13
USP54-214ENST00000492357 FAM135AQ9P2D6 1515 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms