RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 ATN1P54259 1190 aaPredicted RBP10.52□□□□□ -0.73
UPF3B-203ENST00000478840 ATMINO43313 823 aaPredicted RBP10.51□□□□□ -0.73
UPF3B-203ENST00000478840 ZMYND10O75800 440 aa10.5□□□□□ -0.73
UPF3B-203ENST00000478840 MKRN3Q13064 507 aaKnown RBP10.49□□□□□ -0.73
UPF3B-203ENST00000478840 TTLL13PA6NNM8 815 aa10.48□□□□□ -0.73
UPF3B-203ENST00000478840 TIE1P35590 1138 aa10.48□□□□□ -0.73
UPF3B-203ENST00000478840 ASTLQ6HA08 431 aaPredicted RBP10.48□□□□□ -0.73
UPF3B-203ENST00000478840 SLC24A3Q9HC58 644 aa10.47□□□□□ -0.73
UPF3B-203ENST00000478840 BARGINQ6ZT62 677 aa10.44□□□□□ -0.74
UPF3B-203ENST00000478840 GPHNQ9NQX3 736 aaPredicted RBP10.44□□□□□ -0.74
UPF3B-203ENST00000478840 NEUROD2Q15784 382 aa10.42□□□□□ -0.74
UPF3B-203ENST00000478840 PPP1R15BQ5SWA1 713 aa10.42□□□□□ -0.74
UPF3B-203ENST00000478840 TRIM35Q9UPQ4 493 aa10.41□□□□□ -0.74
UPF3B-203ENST00000478840 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.39□□□□□ -0.75
UPF3B-203ENST00000478840 METRNQ9UJH8 293 aa10.38□□□□□ -0.75
UPF3B-203ENST00000478840 SPDYE16A6NNV3 312 aaPredicted RBP10.37□□□□□ -0.75
UPF3B-203ENST00000478840 POTEFA5A3E0 1075 aa10.36□□□□□ -0.75
UPF3B-203ENST00000478840 POTEB2H3BUK9 544 aa10.36□□□□□ -0.75
UPF3B-203ENST00000478840 MLLT3P42568 568 aaPredicted RBP10.36□□□□□ -0.75
UPF3B-203ENST00000478840 PDIA6Q15084 440 aa10.35□□□□□ -0.75
UPF3B-203ENST00000478840 RBM26Q5T8P6 1007 aaKnown RBP10.34□□□□□ -0.75
UPF3B-203ENST00000478840 LHX8Q68G74 356 aa10.34□□□□□ -0.75
UPF3B-203ENST00000478840 C14orf37Q86TY3 774 aa10.34□□□□□ -0.75
UPF3B-203ENST00000478840 GPIHBP1Q8IV16 184 aa10.34□□□□□ -0.75
UPF3B-203ENST00000478840 SLC39A7Q92504 469 aa10.34□□□□□ -0.75
UPF3B-203ENST00000478840 AK7Q96M32 723 aa10.34□□□□□ -0.75
UPF3B-203ENST00000478840 EMILIN3Q9NT22 766 aa10.34□□□□□ -0.75
UPF3B-203ENST00000478840 COLQQ9Y215 455 aaPredicted RBP10.34□□□□□ -0.75
UPF3B-203ENST00000478840 FOXK1P85037 733 aa10.33□□□□□ -0.76
UPF3B-203ENST00000478840 DSG2Q14126 1118 aa10.33□□□□□ -0.76
UPF3B-203ENST00000478840 MICALL2Q8IY33 904 aa10.32□□□□□ -0.76
UPF3B-203ENST00000478840 DPYSL4O14531 572 aa10.31□□□□□ -0.76
UPF3B-203ENST00000478840 C7P10643 843 aa10.31□□□□□ -0.76
UPF3B-203ENST00000478840 PDCD7Q8N8D1 485 aaKnown RBP10.3□□□□□ -0.76
UPF3B-203ENST00000478840 DAXXQ9UER7 740 aaPredicted RBP10.3□□□□□ -0.76
UPF3B-203ENST00000478840 DPY19L2Q6NUT2 758 aa10.29□□□□□ -0.76
UPF3B-203ENST00000478840 TMEM121BQ9BXQ6 578 aaPredicted RBP10.29□□□□□ -0.76
UPF3B-203ENST00000478840 TMC2Q8TDI7 906 aa10.28□□□□□ -0.76
UPF3B-203ENST00000478840 ARXQ96QS3 562 aa10.28□□□□□ -0.76
UPF3B-203ENST00000478840 POTEJP0CG39 1038 aa10.27□□□□□ -0.77
UPF3B-203ENST00000478840 KIF3CO14782 793 aa10.26□□□□□ -0.77
UPF3B-203ENST00000478840 SEC24BO95487 1268 aa10.26□□□□□ -0.77
UPF3B-203ENST00000478840 IRX5P78411 483 aaPredicted RBP10.25□□□□□ -0.77
UPF3B-203ENST00000478840 IER5LQ5T953 404 aa10.25□□□□□ -0.77
UPF3B-203ENST00000478840 GPR37O15354 613 aa10.24□□□□□ -0.77
UPF3B-203ENST00000478840 KRI1Q8N9T8 703 aaKnown RBP10.24□□□□□ -0.77
UPF3B-203ENST00000478840 TRIM66O15016 1216 aa10.23□□□□□ -0.77
UPF3B-203ENST00000478840 PLPP6Q8IY26 295 aa10.23□□□□□ -0.77
UPF3B-203ENST00000478840 OCEL1Q9H607 264 aa10.22□□□□□ -0.77
UPF3B-203ENST00000478840 C2orf72A6NCS6 295 aa10.21□□□□□ -0.77
UPF3B-203ENST00000478840 PLCG2P16885 1265 aa10.21□□□□□ -0.77
UPF3B-203ENST00000478840 GPBP1L1Q9HC44 474 aaPredicted RBP10.21□□□□□ -0.77
UPF3B-203ENST00000478840 BOLA1Q9Y3E2 137 aa10.21□□□□□ -0.77
UPF3B-203ENST00000478840 PDE4DQ08499 809 aa10.2□□□□□ -0.78
UPF3B-203ENST00000478840 KDM4CQ9H3R0 1056 aa10.2□□□□□ -0.78
UPF3B-203ENST00000478840 OTUD5Q96G74 571 aa10.18□□□□□ -0.78
UPF3B-203ENST00000478840 MINK1Q8N4C8 1332 aaPredicted RBP10.17□□□□□ -0.78
UPF3B-203ENST00000478840 PTGER2P43116 358 aa10.17□□□□□ -0.78
UPF3B-203ENST00000478840 MAP3K9P80192 1104 aa10.15□□□□□ -0.78
UPF3B-203ENST00000478840 G3V3G9 751 aa10.14□□□□□ -0.79
UPF3B-203ENST00000478840 OXER1Q8TDS5 423 aa10.14□□□□□ -0.79
UPF3B-203ENST00000478840 OSBPP22059 807 aa10.13□□□□□ -0.79
UPF3B-203ENST00000478840 MAP2K5Q13163 448 aa10.13□□□□□ -0.79
UPF3B-203ENST00000478840 IL27Q8NEV9 243 aa10.13□□□□□ -0.79
UPF3B-203ENST00000478840 MAMSTRQ6ZN01 415 aa10.12□□□□□ -0.79
UPF3B-203ENST00000478840 L3MBTL3Q96JM7 780 aaPredicted RBP10.12□□□□□ -0.79
UPF3B-203ENST00000478840 GRXCR2A6NFK2 248 aa10.11□□□□□ -0.79
UPF3B-203ENST00000478840 IRF6O14896 467 aa10.1□□□□□ -0.79
UPF3B-203ENST00000478840 AMHR2Q16671 573 aa10.1□□□□□ -0.79
UPF3B-203ENST00000478840 NUTM2FA1L443 756 aa10.09□□□□□ -0.79
UPF3B-203ENST00000478840 TMEM92Q6UXU6 159 aa10.09□□□□□ -0.79
UPF3B-203ENST00000478840 CCDC102AQ96A19 550 aa10.09□□□□□ -0.79
UPF3B-203ENST00000478840 GNPATO15228 680 aa10.08□□□□□ -0.8
UPF3B-203ENST00000478840 HIC1Q14526 733 aa10.08□□□□□ -0.8
UPF3B-203ENST00000478840 HOMEZQ8IX15 550 aa10.08□□□□□ -0.8
UPF3B-203ENST00000478840 FCHSD2O94868 740 aa10.07□□□□□ -0.8
UPF3B-203ENST00000478840 TBC1D12O60347 775 aa10.05□□□□□ -0.8
UPF3B-203ENST00000478840 UPF1Q92900 1129 aaKnown RBP eCLIP10.05□□□□□ -0.8
UPF3B-203ENST00000478840 FAM117AQ9C073 453 aa10.05□□□□□ -0.8
UPF3B-203ENST00000478840 SCUBE2Q9NQ36 999 aa10.05□□□□□ -0.8
UPF3B-203ENST00000478840 DDRGK1Q96HY6 314 aa10.04□□□□□ -0.8
UPF3B-203ENST00000478840 PARP9Q8IXQ6 854 aa10.03□□□□□ -0.8
UPF3B-203ENST00000478840 PTCD2Q8WV60 388 aaKnown RBP10.03□□□□□ -0.8
UPF3B-203ENST00000478840 PLEKHG3A1L390 1219 aa10.02□□□□□ -0.81
UPF3B-203ENST00000478840 EVI5O60447 810 aa10.02□□□□□ -0.81
UPF3B-203ENST00000478840 DDX12PQ92771 950 aa10.02□□□□□ -0.81
UPF3B-203ENST00000478840 PRIM1P49642 420 aaKnown RBP10.01□□□□□ -0.81
UPF3B-203ENST00000478840 PTGDRQ13258 359 aa10.01□□□□□ -0.81
UPF3B-203ENST00000478840 ANO8Q9HCE9 1232 aaPredicted RBP10.01□□□□□ -0.81
UPF3B-203ENST00000478840 ZNF316A6NFI3 1004 aaPredicted RBP10□□□□□ -0.81
UPF3B-203ENST00000478840 SUPT5HO00267 1087 aaKnown RBP10□□□□□ -0.81
UPF3B-203ENST00000478840 FECHP22830 423 aa10□□□□□ -0.81
UPF3B-203ENST00000478840 SLAIN1Q8ND83 568 aa10□□□□□ -0.81
UPF3B-203ENST00000478840 GOPCQ9HD26 462 aa10□□□□□ -0.81
UPF3B-203ENST00000478840 SLC34A2O95436 690 aa9.99□□□□□ -0.81
UPF3B-203ENST00000478840 ZMYND15Q9H091 742 aa9.99□□□□□ -0.81
UPF3B-203ENST00000478840 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.97□□□□□ -0.81
UPF3B-203ENST00000478840 C3orf67Q6ZVT6 689 aa9.96□□□□□ -0.82
UPF3B-203ENST00000478840 EPAS1Q99814 870 aa9.94□□□□□ -0.82
UPF3B-203ENST00000478840 RSPH6AQ9H0K4 717 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms