RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 MICALL2Q8IY33 904 aa13.06□□□□□ -0.32
VPS50-212ENST00000476413 PPP1R15BQ5SWA1 713 aa13.04□□□□□ -0.32
VPS50-212ENST00000476413 IER5LQ5T953 404 aa13.02□□□□□ -0.33
VPS50-212ENST00000476413 TMEM121BQ9BXQ6 578 aaPredicted RBP13.02□□□□□ -0.33
VPS50-212ENST00000476413 OCEL1Q9H607 264 aa13□□□□□ -0.33
VPS50-212ENST00000476413 DSG2Q14126 1118 aa12.99□□□□□ -0.33
VPS50-212ENST00000476413 GABBR2O75899 941 aa12.98□□□□□ -0.33
VPS50-212ENST00000476413 TULP1O00294 542 aaPredicted RBP12.97□□□□□ -0.33
VPS50-212ENST00000476413 ZC3H15Q8WU90 426 aaKnown RBP12.97□□□□□ -0.33
VPS50-212ENST00000476413 EMILIN3Q9NT22 766 aa12.97□□□□□ -0.33
VPS50-212ENST00000476413 FOXK1P85037 733 aa12.95□□□□□ -0.34
VPS50-212ENST00000476413 BOLA1Q9Y3E2 137 aa12.95□□□□□ -0.34
VPS50-212ENST00000476413 KIF3CO14782 793 aa12.94□□□□□ -0.34
VPS50-212ENST00000476413 PELP1Q8IZL8 1130 aaKnown RBP12.94□□□□□ -0.34
VPS50-212ENST00000476413 TMC2Q8TDI7 906 aa12.91□□□□□ -0.34
VPS50-212ENST00000476413 C2orf72A6NCS6 295 aa12.9□□□□□ -0.34
VPS50-212ENST00000476413 MLLT3P42568 568 aaPredicted RBP12.9□□□□□ -0.34
VPS50-212ENST00000476413 DPYSL4O14531 572 aa12.89□□□□□ -0.35
VPS50-212ENST00000476413 PLCG2P16885 1265 aa12.89□□□□□ -0.35
VPS50-212ENST00000476413 COLQQ9Y215 455 aaPredicted RBP12.89□□□□□ -0.35
VPS50-212ENST00000476413 SMYD5Q6GMV2 418 aa12.88□□□□□ -0.35
VPS50-212ENST00000476413 PDIA6Q15084 440 aa12.87□□□□□ -0.35
VPS50-212ENST00000476413 TMEM92Q6UXU6 159 aa12.87□□□□□ -0.35
VPS50-212ENST00000476413 POTEFA5A3E0 1075 aa12.86□□□□□ -0.35
VPS50-212ENST00000476413 PLPP6Q8IY26 295 aa12.86□□□□□ -0.35
VPS50-212ENST00000476413 ZMYND10O75800 440 aa12.84□□□□□ -0.35
VPS50-212ENST00000476413 L3MBTL3Q96JM7 780 aaPredicted RBP12.83□□□□□ -0.36
VPS50-212ENST00000476413 SPDYE16A6NNV3 312 aaPredicted RBP12.82□□□□□ -0.36
VPS50-212ENST00000476413 RBM26Q5T8P6 1007 aaKnown RBP12.82□□□□□ -0.36
VPS50-212ENST00000476413 DCBLD2Q96PD2 775 aa12.81□□□□□ -0.36
VPS50-212ENST00000476413 G3V3G9 751 aa12.8□□□□□ -0.36
VPS50-212ENST00000476413 SLC24A3Q9HC58 644 aa12.8□□□□□ -0.36
VPS50-212ENST00000476413 POTEIP0CG38 1075 aa12.79□□□□□ -0.36
VPS50-212ENST00000476413 SEC24BO95487 1268 aa12.78□□□□□ -0.36
VPS50-212ENST00000476413 BRPF1P55201 1214 aaPredicted RBP12.78□□□□□ -0.36
VPS50-212ENST00000476413 SLC39A7Q92504 469 aa12.78□□□□□ -0.36
VPS50-212ENST00000476413 BARGINQ6ZT62 677 aa12.76□□□□□ -0.37
VPS50-212ENST00000476413 C7P10643 843 aa12.74□□□□□ -0.37
VPS50-212ENST00000476413 TMEM132AQ24JP5 1023 aa12.73□□□□□ -0.37
VPS50-212ENST00000476413 GPIHBP1Q8IV16 184 aa12.73□□□□□ -0.37
VPS50-212ENST00000476413 OXER1Q8TDS5 423 aa12.73□□□□□ -0.37
VPS50-212ENST00000476413 METRNQ9UJH8 293 aa12.72□□□□□ -0.37
VPS50-212ENST00000476413 GPR37O15354 613 aa12.7□□□□□ -0.38
VPS50-212ENST00000476413 MAP3K9P80192 1104 aa12.69□□□□□ -0.38
VPS50-212ENST00000476413 UPF1Q92900 1129 aaKnown RBP eCLIP12.69□□□□□ -0.38
VPS50-212ENST00000476413 PTGER2P43116 358 aa12.65□□□□□ -0.38
VPS50-212ENST00000476413 GRXCR2A6NFK2 248 aa12.64□□□□□ -0.39
VPS50-212ENST00000476413 NEUROD2Q15784 382 aa12.64□□□□□ -0.39
VPS50-212ENST00000476413 OSBPP22059 807 aa12.63□□□□□ -0.39
VPS50-212ENST00000476413 PTCD2Q8WV60 388 aaKnown RBP12.62□□□□□ -0.39
VPS50-212ENST00000476413 C3orf67Q6ZVT6 689 aa12.61□□□□□ -0.39
VPS50-212ENST00000476413 GTF3C3Q9Y5Q9 886 aa12.61□□□□□ -0.39
VPS50-212ENST00000476413 AK7Q96M32 723 aa12.6□□□□□ -0.39
VPS50-212ENST00000476413 PRIM1P49642 420 aaKnown RBP12.59□□□□□ -0.39
VPS50-212ENST00000476413 EVI5O60447 810 aa12.58□□□□□ -0.4
VPS50-212ENST00000476413 SLC34A2O95436 690 aa12.58□□□□□ -0.4
VPS50-212ENST00000476413 DDX12PQ92771 950 aa12.58□□□□□ -0.4
VPS50-212ENST00000476413 TBC1D12O60347 775 aa12.55□□□□□ -0.4
VPS50-212ENST00000476413 KRI1Q8N9T8 703 aaKnown RBP12.55□□□□□ -0.4
VPS50-212ENST00000476413 ANO8Q9HCE9 1232 aaPredicted RBP12.54□□□□□ -0.4
VPS50-212ENST00000476413 TRIM66O15016 1216 aa12.53□□□□□ -0.4
VPS50-212ENST00000476413 NUTM2FA1L443 756 aa12.52□□□□□ -0.41
VPS50-212ENST00000476413 TIMELESSQ9UNS1 1208 aa12.52□□□□□ -0.41
VPS50-212ENST00000476413 GPBP1L1Q9HC44 474 aaPredicted RBP12.51□□□□□ -0.41
VPS50-212ENST00000476413 LHX8Q68G74 356 aa12.49□□□□□ -0.41
VPS50-212ENST00000476413 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.49□□□□□ -0.41
VPS50-212ENST00000476413 FECHP22830 423 aa12.48□□□□□ -0.41
VPS50-212ENST00000476413 MINK1Q8N4C8 1332 aaPredicted RBP12.47□□□□□ -0.41
VPS50-212ENST00000476413 KDM4FA0A1W2PPD8 638 aa12.47□□□□□ -0.41
VPS50-212ENST00000476413 POTEJP0CG39 1038 aa12.47□□□□□ -0.41
VPS50-212ENST00000476413 PDE4DQ08499 809 aa12.47□□□□□ -0.41
VPS50-212ENST00000476413 MAP2K5Q13163 448 aa12.47□□□□□ -0.41
VPS50-212ENST00000476413 GNPATO15228 680 aa12.46□□□□□ -0.41
VPS50-212ENST00000476413 FCHSD2O94868 740 aa12.45□□□□□ -0.42
VPS50-212ENST00000476413 PTGDRQ13258 359 aa12.45□□□□□ -0.42
VPS50-212ENST00000476413 HIC1Q14526 733 aa12.45□□□□□ -0.42
VPS50-212ENST00000476413 CCDC102AQ96A19 550 aa12.45□□□□□ -0.42
VPS50-212ENST00000476413 PCDHGA4Q9Y5G9 962 aa12.45□□□□□ -0.42
VPS50-212ENST00000476413 IRF6O14896 467 aa12.44□□□□□ -0.42
VPS50-212ENST00000476413 KDM4CQ9H3R0 1056 aa12.44□□□□□ -0.42
VPS50-212ENST00000476413 ZNF316A6NFI3 1004 aaPredicted RBP12.43□□□□□ -0.42
VPS50-212ENST00000476413 PHF14O94880 888 aa12.42□□□□□ -0.42
VPS50-212ENST00000476413 EN1Q05925 392 aaPredicted RBP12.42□□□□□ -0.42
VPS50-212ENST00000476413 CDHR5Q9HBB8 845 aa12.41□□□□□ -0.42
VPS50-212ENST00000476413 NPDC1Q9NQX5 325 aaPredicted RBP12.41□□□□□ -0.42
VPS50-212ENST00000476413 PCDHGA10Q9Y5H3 936 aa12.41□□□□□ -0.42
VPS50-212ENST00000476413 POTEB2H3BUK9 544 aa12.4□□□□□ -0.42
VPS50-212ENST00000476413 EPAS1Q99814 870 aa12.4□□□□□ -0.42
VPS50-212ENST00000476413 AMHR2Q16671 573 aa12.38□□□□□ -0.43
VPS50-212ENST00000476413 HOXB3P14651 431 aaPredicted RBP12.35□□□□□ -0.43
VPS50-212ENST00000476413 SLAIN1Q8ND83 568 aa12.35□□□□□ -0.43
VPS50-212ENST00000476413 TSR1Q2NL82 804 aaKnown RBP12.34□□□□□ -0.43
VPS50-212ENST00000476413 PARP9Q8IXQ6 854 aa12.34□□□□□ -0.43
VPS50-212ENST00000476413 IL27Q8NEV9 243 aa12.34□□□□□ -0.43
VPS50-212ENST00000476413 JPH4Q96JJ6 628 aa12.34□□□□□ -0.43
VPS50-212ENST00000476413 MAP3K7O43318 606 aa12.33□□□□□ -0.44
VPS50-212ENST00000476413 TYW1BQ6NUM6 668 aa12.33□□□□□ -0.44
VPS50-212ENST00000476413 RBM33Q96EV2 1170 aaKnown RBP12.33□□□□□ -0.44
VPS50-212ENST00000476413 FOSBP53539 338 aa12.31□□□□□ -0.44
VPS50-212ENST00000476413 FAM117AQ9C073 453 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms