RNA–Protein interactions for RNA: ENST00000444440.1

SF3A1-203, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 777 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-203ENST00000444440 BCORL1Q5H9F3 1711 aa17.74■□□□□ 0.43
SF3A1-203ENST00000444440 DENND4BO75064 1496 aaPredicted RBP17.74■□□□□ 0.43
SF3A1-203ENST00000444440 ARHGAP5Q13017 1502 aa17.69■□□□□ 0.42
SF3A1-203ENST00000444440 ITSN2Q9NZM3 1697 aa17.68■□□□□ 0.42
SF3A1-203ENST00000444440 CEP162Q5TB80 1403 aa17.68■□□□□ 0.42
SF3A1-203ENST00000444440 POGZQ7Z3K3 1410 aa17.68■□□□□ 0.42
SF3A1-203ENST00000444440 MADDQ8WXG6 1647 aa17.68■□□□□ 0.42
SF3A1-203ENST00000444440 ZFYVE16Q7Z3T8 1539 aa17.67■□□□□ 0.42
SF3A1-203ENST00000444440 SCAPERQ9BY12 1400 aa17.67■□□□□ 0.42
SF3A1-203ENST00000444440 YEATS2Q9ULM3 1422 aa17.67■□□□□ 0.42
SF3A1-203ENST00000444440 CDK11AQ9UQ88 783 aaPredicted RBP17.67■□□□□ 0.42
SF3A1-203ENST00000444440 RIMS1Q86UR5 1692 aaKnown RBP17.64■□□□□ 0.42
SF3A1-203ENST00000444440 ABCC1P33527 1531 aa17.64■□□□□ 0.41
SF3A1-203ENST00000444440 KDM5CP41229 1560 aa17.64■□□□□ 0.41
SF3A1-203ENST00000444440 ARHGEF12Q9NZN5 1544 aa17.62■□□□□ 0.41
SF3A1-203ENST00000444440 HECW2Q9P2P5 1572 aa17.62■□□□□ 0.41
SF3A1-203ENST00000444440 SAMD9LQ8IVG5 1584 aa17.62■□□□□ 0.41
SF3A1-203ENST00000444440 LOC105371045A0A1W2PR82 267 aa17.61■□□□□ 0.41
SF3A1-203ENST00000444440 EFCAB2Q5VUJ9 269 aa17.6■□□□□ 0.41
SF3A1-203ENST00000444440 MAGI2Q86UL8 1455 aa17.6■□□□□ 0.41
SF3A1-203ENST00000444440 ABCA6Q8N139 1617 aa17.6■□□□□ 0.41
SF3A1-203ENST00000444440 FER1L4A9Z1Z3 1794 aa17.6■□□□□ 0.41
SF3A1-203ENST00000444440 DIP2CQ9Y2E4 1556 aa17.58■□□□□ 0.41
SF3A1-203ENST00000444440 KIDINS220Q9ULH0 1771 aa17.58■□□□□ 0.4
SF3A1-203ENST00000444440 PTPRMP28827 1452 aa17.57■□□□□ 0.4
SF3A1-203ENST00000444440 ZNF518AQ6AHZ1 1483 aa17.57■□□□□ 0.4
SF3A1-203ENST00000444440 TIAM1Q13009 1591 aa17.57■□□□□ 0.4
SF3A1-203ENST00000444440 GPATCH8Q9UKJ3 1502 aaKnown RBP17.56■□□□□ 0.4
SF3A1-203ENST00000444440 TRAPPC8Q9Y2L5 1435 aa17.55■□□□□ 0.4
SF3A1-203ENST00000444440 EHBP1L1Q8N3D4 1523 aa17.55■□□□□ 0.4
SF3A1-203ENST00000444440 SYCP2Q9BX26 1530 aa17.54■□□□□ 0.4
SF3A1-203ENST00000444440 AFAP1Q8N556 730 aa17.54■□□□□ 0.4
SF3A1-203ENST00000444440 ARID4BQ4LE39 1312 aaPredicted RBP17.53■□□□□ 0.4
SF3A1-203ENST00000444440 ATP10AO60312 1499 aa17.53■□□□□ 0.4
SF3A1-203ENST00000444440 C9orf84Q5VXU9 1444 aa17.51■□□□□ 0.39
SF3A1-203ENST00000444440 SUPT6HQ7KZ85 1726 aaKnown RBP17.5■□□□□ 0.39
SF3A1-203ENST00000444440 REREQ9P2R6 1566 aa17.5■□□□□ 0.39
SF3A1-203ENST00000444440 MTUS2Q5JR59 1369 aa17.5■□□□□ 0.39
SF3A1-203ENST00000444440 MLH3Q9UHC1 1453 aa17.5■□□□□ 0.39
SF3A1-203ENST00000444440 INO80Q9ULG1 1556 aaPredicted RBP17.47■□□□□ 0.39
SF3A1-203ENST00000444440 VPS8Q8N3P4 1428 aa17.47■□□□□ 0.39
SF3A1-203ENST00000444440 CCNB3Q8WWL7 1395 aa17.45■□□□□ 0.38
SF3A1-203ENST00000444440 ZNF777Q9ULD5 760 aaPredicted RBP17.45■□□□□ 0.38
SF3A1-203ENST00000444440 MLECQ14165 292 aa17.44■□□□□ 0.38
SF3A1-203ENST00000444440 NCOA2Q15596 1464 aa17.43■□□□□ 0.38
SF3A1-203ENST00000444440 HNRNPMP52272 730 aaKnown RBP eCLIP17.42■□□□□ 0.38
SF3A1-203ENST00000444440 C3P01024 1663 aa17.42■□□□□ 0.38
SF3A1-203ENST00000444440 ADGBQ8N7X0 1667 aa17.42■□□□□ 0.38
SF3A1-203ENST00000444440 ATP7AQ04656 1500 aa17.42■□□□□ 0.38
SF3A1-203ENST00000444440 LMTK3Q96Q04 1460 aa17.41■□□□□ 0.38
SF3A1-203ENST00000444440 ZNF644Q9H582 1327 aaPredicted RBP17.41■□□□□ 0.38
SF3A1-203ENST00000444440 KIAA1107Q9UPP5 1409 aa17.4■□□□□ 0.38
SF3A1-203ENST00000444440 CFDP1Q9UEE9 299 aaPredicted RBP17.4■□□□□ 0.38
SF3A1-203ENST00000444440 AGLP35573 1532 aa17.4■□□□□ 0.38
SF3A1-203ENST00000444440 LRRC9Q6ZRR7 1453 aa17.39■□□□□ 0.37
SF3A1-203ENST00000444440 PLXNC1O60486 1568 aa17.39■□□□□ 0.37
SF3A1-203ENST00000444440 PLEKHH2Q8IVE3 1493 aa17.38■□□□□ 0.37
SF3A1-203ENST00000444440 MBD5Q9P267 1494 aa17.38■□□□□ 0.37
SF3A1-203ENST00000444440 MYT1LQ9UL68 1186 aa17.38■□□□□ 0.37
SF3A1-203ENST00000444440 PREX1Q8TCU6 1659 aa17.38■□□□□ 0.37
SF3A1-203ENST00000444440 PLPPR3Q6T4P5 718 aa17.37■□□□□ 0.37
SF3A1-203ENST00000444440 CAMSAP2Q08AD1 1489 aa17.36■□□□□ 0.37
SF3A1-203ENST00000444440 MAP3K1Q13233 1512 aa17.36■□□□□ 0.37
SF3A1-203ENST00000444440 CLTCQ00610 1675 aaKnown RBP17.33■□□□□ 0.37
SF3A1-203ENST00000444440 SPAG9O60271 1321 aaKnown RBP17.33■□□□□ 0.36
SF3A1-203ENST00000444440 KANK4Q5T7N3 995 aaPredicted RBP17.33■□□□□ 0.36
SF3A1-203ENST00000444440 MROH2AA6NES4 1674 aa17.32■□□□□ 0.36
SF3A1-203ENST00000444440 SETD1BQ9UPS6 1966 aaKnown RBP17.32■□□□□ 0.36
SF3A1-203ENST00000444440 CEBPAP49715 358 aaPredicted RBP17.31■□□□□ 0.36
SF3A1-203ENST00000444440 ARHGEF5Q12774 1597 aa17.3■□□□□ 0.36
SF3A1-203ENST00000444440 A2MP01023 1474 aa17.3■□□□□ 0.36
SF3A1-203ENST00000444440 CCDC141Q6ZP82 1450 aa17.28■□□□□ 0.36
SF3A1-203ENST00000444440 STRCQ7RTU9 1775 aa17.28■□□□□ 0.36
SF3A1-203ENST00000444440 HSPA2P54652 639 aa17.26■□□□□ 0.35
SF3A1-203ENST00000444440 CROCC2H7BZ55 1655 aa17.26■□□□□ 0.35
SF3A1-203ENST00000444440 RTEL1-TNFRSF6BF6WH68 1400 aa17.25■□□□□ 0.35
SF3A1-203ENST00000444440 MAST1Q9Y2H9 1570 aa17.23■□□□□ 0.35
SF3A1-203ENST00000444440 MYOM3Q5VTT5 1437 aa17.22■□□□□ 0.35
SF3A1-203ENST00000444440 PTPN23Q9H3S7 1636 aa17.21■□□□□ 0.35
SF3A1-203ENST00000444440 CNTLNQ9NXG0 1405 aa17.2■□□□□ 0.34
SF3A1-203ENST00000444440 MYO3AQ8NEV4 1616 aa17.18■□□□□ 0.34
SF3A1-203ENST00000444440 MIA2Q96PC5 1412 aa17.18■□□□□ 0.34
SF3A1-203ENST00000444440 DHX29Q7Z478 1369 aaKnown RBP17.17■□□□□ 0.34
SF3A1-203ENST00000444440 ZNF142P52746 1687 aaPredicted RBP17.17■□□□□ 0.34
SF3A1-203ENST00000444440 UHRF1BP1Q6BDS2 1440 aa17.17■□□□□ 0.34
SF3A1-203ENST00000444440 RNF17Q9BXT8 1623 aaKnown RBP17.16■□□□□ 0.34
SF3A1-203ENST00000444440 ZMYM3Q14202 1370 aa17.15■□□□□ 0.34
SF3A1-203ENST00000444440 DNMT1P26358 1616 aaKnown RBP17.15■□□□□ 0.34
SF3A1-203ENST00000444440 GGT6Q6P531 493 aa17.15■□□□□ 0.34
SF3A1-203ENST00000444440 CEP152O94986 1710 aa17.15■□□□□ 0.34
SF3A1-203ENST00000444440 MROH1Q8NDA8 1641 aa17.14■□□□□ 0.33
SF3A1-203ENST00000444440 EIF2AK4Q9P2K8 1649 aaKnown RBP17.14■□□□□ 0.33
SF3A1-203ENST00000444440 ILDR1Q86SU0 546 aaPredicted RBP17.14■□□□□ 0.33
SF3A1-203ENST00000444440 CFAP65Q6ZU64 1925 aaKnown RBP17.13■□□□□ 0.33
SF3A1-203ENST00000444440 ESF1Q9H501 851 aaKnown RBP17.13■□□□□ 0.33
SF3A1-203ENST00000444440 NPATQ14207 1427 aa17.12■□□□□ 0.33
SF3A1-203ENST00000444440 PTPRKQ15262 1439 aa17.12■□□□□ 0.33
SF3A1-203ENST00000444440 TCOF1Q13428 1488 aaKnown RBP17.12■□□□□ 0.33
SF3A1-203ENST00000444440 KDM5DQ9BY66 1539 aa17.11■□□□□ 0.33
SF3A1-203ENST00000444440 RSPH4AQ5TD94 716 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms