RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 PIP4P2Q8N4L2 257 aa8.72□□□□□ -1.01
MCF2-205ENST00000437564 CFAP44Q96MT7 982 aa8.71□□□□□ -1.02
MCF2-205ENST00000437564 PDCL3Q9H2J4 239 aa8.71□□□□□ -1.02
MCF2-205ENST00000437564 MCCP23508 829 aa8.7□□□□□ -1.02
MCF2-205ENST00000437564 PTMSP20962 102 aa8.69□□□□□ -1.02
MCF2-205ENST00000437564 ECM2O94769 699 aaPredicted RBP8.68□□□□□ -1.02
MCF2-205ENST00000437564 IGSF3O75054 1194 aa8.68□□□□□ -1.02
MCF2-205ENST00000437564 RGS3P49796 1198 aa8.67□□□□□ -1.02
MCF2-205ENST00000437564 WWC1Q8IX03 1113 aa8.67□□□□□ -1.02
MCF2-205ENST00000437564 PLCD4Q9BRC7 762 aa8.66□□□□□ -1.02
MCF2-205ENST00000437564 BRPF3Q9ULD4 1205 aa8.66□□□□□ -1.02
MCF2-205ENST00000437564 UBTFP17480 764 aaKnown RBP8.66□□□□□ -1.02
MCF2-205ENST00000437564 MMP14P50281 582 aa8.66□□□□□ -1.02
MCF2-205ENST00000437564 AXDND1Q5T1B0 1012 aaPredicted RBP8.66□□□□□ -1.02
MCF2-205ENST00000437564 SPOCK2Q92563 424 aa8.66□□□□□ -1.02
MCF2-205ENST00000437564 RGS22Q8NE09 1264 aa8.65□□□□□ -1.02
MCF2-205ENST00000437564 ZNF622Q969S3 477 aaKnown RBP eCLIP8.64□□□□□ -1.03
MCF2-205ENST00000437564 SUPT5HO00267 1087 aaKnown RBP8.64□□□□□ -1.03
MCF2-205ENST00000437564 SETQ01105 290 aaPredicted RBP8.64□□□□□ -1.03
MCF2-205ENST00000437564 SMAP1Q8IYB5 467 aaPredicted RBP8.64□□□□□ -1.03
MCF2-205ENST00000437564 ZNF592Q92610 1267 aa8.63□□□□□ -1.03
MCF2-205ENST00000437564 RGL2O15211 777 aa8.62□□□□□ -1.03
MCF2-205ENST00000437564 FAM193AP78312 1265 aa8.62□□□□□ -1.03
MCF2-205ENST00000437564 SPRYD3Q8NCJ5 442 aa8.62□□□□□ -1.03
MCF2-205ENST00000437564 PSMD1Q99460 953 aa8.62□□□□□ -1.03
MCF2-205ENST00000437564 POLA2Q14181 598 aa8.62□□□□□ -1.03
MCF2-205ENST00000437564 GSE1Q14687 1217 aa8.62□□□□□ -1.03
MCF2-205ENST00000437564 UTP14CQ5TAP6 766 aaKnown RBP8.62□□□□□ -1.03
MCF2-205ENST00000437564 PHF14O94880 888 aa8.61□□□□□ -1.03
MCF2-205ENST00000437564 IRX3P78415 501 aaPredicted RBP8.61□□□□□ -1.03
MCF2-205ENST00000437564 IPO9Q96P70 1041 aaKnown RBP8.61□□□□□ -1.03
MCF2-205ENST00000437564 PRDM10Q9NQV6 1147 aa8.61□□□□□ -1.03
MCF2-205ENST00000437564 KCNG1Q9UIX4 513 aa8.61□□□□□ -1.03
MCF2-205ENST00000437564 ANP32AP39687 249 aaKnown RBP8.61□□□□□ -1.03
MCF2-205ENST00000437564 MAP7D2Q96T17 732 aa8.61□□□□□ -1.03
MCF2-205ENST00000437564 TMEM51Q9NW97 253 aa8.61□□□□□ -1.03
MCF2-205ENST00000437564 ZBTB47Q9UFB7 747 aaPredicted RBP8.6□□□□□ -1.03
MCF2-205ENST00000437564 FXR2P51116 673 aaKnown RBP eCLIP8.59□□□□□ -1.03
MCF2-205ENST00000437564 TAF3Q5VWG9 929 aa8.59□□□□□ -1.03
MCF2-205ENST00000437564 REM2Q8IYK8 340 aaPredicted RBP8.59□□□□□ -1.03
MCF2-205ENST00000437564 ZNF830Q96NB3 372 aaPredicted RBP8.59□□□□□ -1.03
MCF2-205ENST00000437564 PAK3O75914 559 aaPredicted RBP8.59□□□□□ -1.03
MCF2-205ENST00000437564 TPM2P07951 284 aa8.58□□□□□ -1.04
MCF2-205ENST00000437564 TRIM44Q96DX7 344 aaPredicted RBP8.57□□□□□ -1.04
MCF2-205ENST00000437564 LHX8Q68G74 356 aa8.56□□□□□ -1.04
MCF2-205ENST00000437564 PNNQ9H307 717 aaKnown RBP8.56□□□□□ -1.04
MCF2-205ENST00000437564 TNNT2P45379 298 aaPredicted RBP8.55□□□□□ -1.04
MCF2-205ENST00000437564 HDAC5Q9UQL6 1122 aa8.55□□□□□ -1.04
MCF2-205ENST00000437564 DNAJC5Q9H3Z4 198 aa8.55□□□□□ -1.04
MCF2-205ENST00000437564 PATL2C9JE40 543 aaKnown RBP8.54□□□□□ -1.04
MCF2-205ENST00000437564 PLCD3Q8N3E9 789 aa8.54□□□□□ -1.04
MCF2-205ENST00000437564 CEP120Q8N960 986 aa8.53□□□□□ -1.04
MCF2-205ENST00000437564 KIF20AO95235 890 aa8.52□□□□□ -1.05
MCF2-205ENST00000437564 CLCN1P35523 988 aa8.52□□□□□ -1.05
MCF2-205ENST00000437564 CC2D2BQ6DHV5 1058 aa8.52□□□□□ -1.05
MCF2-205ENST00000437564 PLSCR2Q9NRY7 297 aa8.52□□□□□ -1.05
MCF2-205ENST00000437564 APPP05067 770 aa8.52□□□□□ -1.05
MCF2-205ENST00000437564 ITGAEP38570 1179 aa8.51□□□□□ -1.05
MCF2-205ENST00000437564 DNAJC2Q99543 621 aaKnown RBP8.51□□□□□ -1.05
MCF2-205ENST00000437564 ZBTB12Q9Y330 459 aaPredicted RBP8.51□□□□□ -1.05
MCF2-205ENST00000437564 CHGAP10645 457 aaKnown RBP8.5□□□□□ -1.05
MCF2-205ENST00000437564 EVX2Q03828 476 aa8.5□□□□□ -1.05
MCF2-205ENST00000437564 TMED8Q6PL24 325 aaPredicted RBP8.5□□□□□ -1.05
MCF2-205ENST00000437564 FAM43BQ6ZT52 329 aaPredicted RBP8.5□□□□□ -1.05
MCF2-205ENST00000437564 MTERF4Q7Z6M4 381 aaKnown RBP8.5□□□□□ -1.05
MCF2-205ENST00000437564 DDRGK1Q96HY6 314 aa8.5□□□□□ -1.05
MCF2-205ENST00000437564 SLC20A2Q08357 652 aa8.5□□□□□ -1.05
MCF2-205ENST00000437564 STAG3Q9UJ98 1225 aa8.5□□□□□ -1.05
MCF2-205ENST00000437564 LAS1LQ9Y4W2 734 aaKnown RBP8.5□□□□□ -1.05
MCF2-205ENST00000437564 PSEN1P49768 467 aa8.49□□□□□ -1.05
MCF2-205ENST00000437564 PPP4R3BQ5MIZ7 849 aa8.49□□□□□ -1.05
MCF2-205ENST00000437564 PITPNM1O00562 1244 aa8.48□□□□□ -1.05
MCF2-205ENST00000437564 DMTNQ08495 405 aa8.48□□□□□ -1.05
MCF2-205ENST00000437564 GOLGA6L3A6NEY3 463 aa8.46□□□□□ -1.05
MCF2-205ENST00000437564 MAFGO15525 162 aa8.46□□□□□ -1.05
MCF2-205ENST00000437564 YY1AP1Q9H869 796 aa8.46□□□□□ -1.05
MCF2-205ENST00000437564 CC2D1BQ5T0F9 858 aaKnown RBP8.46□□□□□ -1.06
MCF2-205ENST00000437564 ANAPC15P60006 121 aa8.45□□□□□ -1.06
MCF2-205ENST00000437564 NBPF20Q3BBV1 942 aa8.45□□□□□ -1.06
MCF2-205ENST00000437564 CERS3Q8IU89 383 aa8.45□□□□□ -1.06
MCF2-205ENST00000437564 GPATCH11Q8N954 259 aa8.45□□□□□ -1.06
MCF2-205ENST00000437564 GTPBP4Q9BZE4 634 aaKnown RBP8.45□□□□□ -1.06
MCF2-205ENST00000437564 RRAGDQ9NQL2 400 aaPredicted RBP8.45□□□□□ -1.06
MCF2-205ENST00000437564 LETM1O95202 739 aaPredicted RBP8.44□□□□□ -1.06
MCF2-205ENST00000437564 DNTTIP2Q5QJE6 756 aaKnown RBP8.44□□□□□ -1.06
MCF2-205ENST00000437564 PRDM16Q9HAZ2 1276 aa8.44□□□□□ -1.06
MCF2-205ENST00000437564 NISCHQ9Y2I1 1504 aa8.44□□□□□ -1.06
MCF2-205ENST00000437564 TERF1P54274 439 aa8.43□□□□□ -1.06
MCF2-205ENST00000437564 OS9Q13438 667 aaPredicted RBP8.42□□□□□ -1.06
MCF2-205ENST00000437564 L1TD1Q5T7N2 865 aaKnown RBP8.42□□□□□ -1.06
MCF2-205ENST00000437564 FRAT1Q92837 279 aaPredicted RBP8.42□□□□□ -1.06
MCF2-205ENST00000437564 SLC52A1Q9NWF4 448 aa8.42□□□□□ -1.06
MCF2-205ENST00000437564 GEMIN8Q9NWZ8 242 aaKnown RBP8.42□□□□□ -1.06
MCF2-205ENST00000437564 PPP4R2Q9NY27 417 aa8.42□□□□□ -1.06
MCF2-205ENST00000437564 VGLL3A8MV65 326 aa8.42□□□□□ -1.06
MCF2-205ENST00000437564 RALBP1Q15311 655 aa8.42□□□□□ -1.06
MCF2-205ENST00000437564 CARD10Q9BWT7 1032 aa8.41□□□□□ -1.06
MCF2-205ENST00000437564 ZNF692Q9BU19 519 aaPredicted RBP8.41□□□□□ -1.06
MCF2-205ENST00000437564 CIZ1Q9ULV3 898 aaPredicted RBP8.41□□□□□ -1.06
MCF2-205ENST00000437564 ZHX1Q9UKY1 873 aaPredicted RBP8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms