RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 LARP6Q9BRS8 491 aaKnown RBP7.94□□□□□ -1.14
HMGB3-203ENST00000430118 ATMINO43313 823 aaPredicted RBP7.93□□□□□ -1.14
HMGB3-203ENST00000430118 C14orf37Q86TY3 774 aa7.93□□□□□ -1.14
HMGB3-203ENST00000430118 GOLGA2Q08379 1002 aa7.92□□□□□ -1.14
HMGB3-203ENST00000430118 MS4A4AQ96JQ5 239 aa7.92□□□□□ -1.14
HMGB3-203ENST00000430118 POTEB2H3BUK9 544 aa7.91□□□□□ -1.14
HMGB3-203ENST00000430118 NEUROD2Q15784 382 aa7.91□□□□□ -1.14
HMGB3-203ENST00000430118 BARGINQ6ZT62 677 aa7.9□□□□□ -1.14
HMGB3-203ENST00000430118 SLC39A7Q92504 469 aa7.9□□□□□ -1.14
HMGB3-203ENST00000430118 SLC24A3Q9HC58 644 aa7.9□□□□□ -1.14
HMGB3-203ENST00000430118 C7P10643 843 aa7.89□□□□□ -1.15
HMGB3-203ENST00000430118 OTUD5Q96G74 571 aa7.88□□□□□ -1.15
HMGB3-203ENST00000430118 METRNQ9UJH8 293 aa7.88□□□□□ -1.15
HMGB3-203ENST00000430118 ATN1P54259 1190 aaPredicted RBP7.87□□□□□ -1.15
HMGB3-203ENST00000430118 MKRN3Q13064 507 aaKnown RBP7.87□□□□□ -1.15
HMGB3-203ENST00000430118 ILDR1Q86SU0 546 aaPredicted RBP7.87□□□□□ -1.15
HMGB3-203ENST00000430118 CCDC180Q9P1Z9 1646 aa7.87□□□□□ -1.15
HMGB3-203ENST00000430118 TMEM106CQ9BVX2 250 aa7.86□□□□□ -1.15
HMGB3-203ENST00000430118 SPDYE16A6NNV3 312 aaPredicted RBP7.85□□□□□ -1.15
HMGB3-203ENST00000430118 AK7Q96M32 723 aa7.85□□□□□ -1.15
HMGB3-203ENST00000430118 GPHNQ9NQX3 736 aaPredicted RBP7.85□□□□□ -1.15
HMGB3-203ENST00000430118 BMP2KQ9NSY1 1161 aaPredicted RBP7.85□□□□□ -1.15
HMGB3-203ENST00000430118 TRPC6Q9Y210 931 aa7.85□□□□□ -1.15
HMGB3-203ENST00000430118 TIE1P35590 1138 aa7.84□□□□□ -1.15
HMGB3-203ENST00000430118 PPP1R15BQ5SWA1 713 aa7.83□□□□□ -1.16
HMGB3-203ENST00000430118 GPIHBP1Q8IV16 184 aa7.83□□□□□ -1.16
HMGB3-203ENST00000430118 HOMEZQ8IX15 550 aa7.81□□□□□ -1.16
HMGB3-203ENST00000430118 TTLL13PA6NNM8 815 aa7.8□□□□□ -1.16
HMGB3-203ENST00000430118 PDIA6Q15084 440 aa7.8□□□□□ -1.16
HMGB3-203ENST00000430118 POTEJP0CG39 1038 aa7.79□□□□□ -1.16
HMGB3-203ENST00000430118 MAMSTRQ6ZN01 415 aa7.78□□□□□ -1.16
HMGB3-203ENST00000430118 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.77□□□□□ -1.17
HMGB3-203ENST00000430118 POTEFA5A3E0 1075 aa7.76□□□□□ -1.17
HMGB3-203ENST00000430118 FOXK1P85037 733 aa7.76□□□□□ -1.17
HMGB3-203ENST00000430118 RBM26Q5T8P6 1007 aaKnown RBP7.76□□□□□ -1.17
HMGB3-203ENST00000430118 MLLT3P42568 568 aaPredicted RBP7.75□□□□□ -1.17
HMGB3-203ENST00000430118 KRI1Q8N9T8 703 aaKnown RBP7.75□□□□□ -1.17
HMGB3-203ENST00000430118 TRIM35Q9UPQ4 493 aa7.75□□□□□ -1.17
HMGB3-203ENST00000430118 SEC24BO95487 1268 aa7.74□□□□□ -1.17
HMGB3-203ENST00000430118 SCUBE2Q9NQ36 999 aa7.74□□□□□ -1.17
HMGB3-203ENST00000430118 DPYSL4O14531 572 aa7.73□□□□□ -1.17
HMGB3-203ENST00000430118 TMC2Q8TDI7 906 aa7.73□□□□□ -1.17
HMGB3-203ENST00000430118 EMILIN3Q9NT22 766 aa7.73□□□□□ -1.17
HMGB3-203ENST00000430118 TRIM66O15016 1216 aa7.72□□□□□ -1.17
HMGB3-203ENST00000430118 DSG2Q14126 1118 aa7.72□□□□□ -1.17
HMGB3-203ENST00000430118 IER5LQ5T953 404 aa7.72□□□□□ -1.17
HMGB3-203ENST00000430118 KDM4CQ9H3R0 1056 aa7.72□□□□□ -1.17
HMGB3-203ENST00000430118 COLQQ9Y215 455 aaPredicted RBP7.72□□□□□ -1.17
HMGB3-203ENST00000430118 PDE4DQ08499 809 aa7.71□□□□□ -1.18
HMGB3-203ENST00000430118 MICALL2Q8IY33 904 aa7.71□□□□□ -1.18
HMGB3-203ENST00000430118 MINK1Q8N4C8 1332 aaPredicted RBP7.7□□□□□ -1.18
HMGB3-203ENST00000430118 GPR37O15354 613 aa7.69□□□□□ -1.18
HMGB3-203ENST00000430118 TMEM121BQ9BXQ6 578 aaPredicted RBP7.69□□□□□ -1.18
HMGB3-203ENST00000430118 GPBP1L1Q9HC44 474 aaPredicted RBP7.68□□□□□ -1.18
HMGB3-203ENST00000430118 POTEMA6NI47 508 aa7.67□□□□□ -1.18
HMGB3-203ENST00000430118 KIF3CO14782 793 aa7.67□□□□□ -1.18
HMGB3-203ENST00000430118 MAP2K5Q13163 448 aa7.67□□□□□ -1.18
HMGB3-203ENST00000430118 PDCD7Q8N8D1 485 aaKnown RBP7.67□□□□□ -1.18
HMGB3-203ENST00000430118 PTGER2P43116 358 aa7.66□□□□□ -1.18
HMGB3-203ENST00000430118 PLPP6Q8IY26 295 aa7.66□□□□□ -1.18
HMGB3-203ENST00000430118 DDRGK1Q96HY6 314 aa7.66□□□□□ -1.18
HMGB3-203ENST00000430118 AMHR2Q16671 573 aa7.65□□□□□ -1.18
HMGB3-203ENST00000430118 G3V3G9 751 aa7.64□□□□□ -1.19
HMGB3-203ENST00000430118 PLCG2P16885 1265 aa7.64□□□□□ -1.19
HMGB3-203ENST00000430118 POTEGQ6S5H5 508 aa7.64□□□□□ -1.19
HMGB3-203ENST00000430118 IL27Q8NEV9 243 aa7.64□□□□□ -1.19
HMGB3-203ENST00000430118 FAM163AQ96GL9 167 aaPredicted RBP7.64□□□□□ -1.19
HMGB3-203ENST00000430118 OCEL1Q9H607 264 aa7.64□□□□□ -1.19
HMGB3-203ENST00000430118 BOLA1Q9Y3E2 137 aa7.64□□□□□ -1.19
HMGB3-203ENST00000430118 IRX5P78411 483 aaPredicted RBP7.63□□□□□ -1.19
HMGB3-203ENST00000430118 MAP3K9P80192 1104 aa7.63□□□□□ -1.19
HMGB3-203ENST00000430118 HIC1Q14526 733 aa7.63□□□□□ -1.19
HMGB3-203ENST00000430118 ZMYND15Q9H091 742 aa7.63□□□□□ -1.19
HMGB3-203ENST00000430118 RB1CC1Q8TDY2 1594 aa7.63□□□□□ -1.19
HMGB3-203ENST00000430118 IRF6O14896 467 aa7.62□□□□□ -1.19
HMGB3-203ENST00000430118 GNPATO15228 680 aa7.62□□□□□ -1.19
HMGB3-203ENST00000430118 DPY19L2Q6NUT2 758 aa7.62□□□□□ -1.19
HMGB3-203ENST00000430118 GOPCQ9HD26 462 aa7.62□□□□□ -1.19
HMGB3-203ENST00000430118 C2orf72A6NCS6 295 aa7.61□□□□□ -1.19
HMGB3-203ENST00000430118 FCHSD2O94868 740 aa7.61□□□□□ -1.19
HMGB3-203ENST00000430118 L3MBTL3Q96JM7 780 aaPredicted RBP7.61□□□□□ -1.19
HMGB3-203ENST00000430118 RSPH6AQ9H0K4 717 aa7.61□□□□□ -1.19
HMGB3-203ENST00000430118 PLSCR2Q9NRY7 297 aa7.61□□□□□ -1.19
HMGB3-203ENST00000430118 OXER1Q8TDS5 423 aa7.6□□□□□ -1.19
HMGB3-203ENST00000430118 CCDC102AQ96A19 550 aa7.6□□□□□ -1.19
HMGB3-203ENST00000430118 NUTM2FA1L443 756 aa7.59□□□□□ -1.19
HMGB3-203ENST00000430118 SUPT5HO00267 1087 aaKnown RBP7.59□□□□□ -1.19
HMGB3-203ENST00000430118 TBC1D12O60347 775 aa7.59□□□□□ -1.19
HMGB3-203ENST00000430118 OSBPP22059 807 aa7.59□□□□□ -1.19
HMGB3-203ENST00000430118 LCE2DQ5TA82 110 aaPredicted RBP7.59□□□□□ -1.19
HMGB3-203ENST00000430118 ZNF316A6NFI3 1004 aaPredicted RBP7.58□□□□□ -1.2
HMGB3-203ENST00000430118 GRXCR2A6NFK2 248 aa7.58□□□□□ -1.2
HMGB3-203ENST00000430118 FLIIQ13045 1269 aa7.58□□□□□ -1.2
HMGB3-203ENST00000430118 SLAIN1Q8ND83 568 aa7.58□□□□□ -1.2
HMGB3-203ENST00000430118 FAM117AQ9C073 453 aa7.57□□□□□ -1.2
HMGB3-203ENST00000430118 PCDH10Q9P2E7 1040 aa7.57□□□□□ -1.2
HMGB3-203ENST00000430118 PARP9Q8IXQ6 854 aa7.56□□□□□ -1.2
HMGB3-203ENST00000430118 PLEKHG3A1L390 1219 aa7.55□□□□□ -1.2
HMGB3-203ENST00000430118 PTGDRQ13258 359 aa7.53□□□□□ -1.2
HMGB3-203ENST00000430118 PTCD2Q8WV60 388 aaKnown RBP7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms